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| <StructureSection load='1hzh' size='450' side='right' scene='' caption='Glycosylated human Igg with heavy chains (red and light red), light chains (aqua and green) (PDB code [[1hzh]])'> | | <StructureSection load='1hzh' size='350' side='right' scene='' caption='Glycosylated human Igg with heavy chains (red and light red), light chains (aqua and green) (PDB code [[1hzh]])'> |
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| '''Antibodies''', also known as '''Immunoglobulins''' (Ig) are gamma globulin proteins, primarily found in the blood of vertebrates. These [[glycoproteins]] serve as a critical component of the immune system when the host fails to activate alternative compliment pathways or phagocytic cells in response to invading microorganisms or other [http://en.wikipedia.org/wiki/Antigen antigens]. The incredible specificity with which immunoglobulins bind to an antigen is based upon structural complementarity between the antigen and antibody <scene name='Antibody/1hzh_heavy_chains/1'>heavy </scene>and <scene name='Antibody/1hzh_light_chains/1'>light chains </scene>. It is this specificity that has made <scene name='Antibody/1hzh_starting_scene/3'>antibodies</scene> a critical component in laboratory and medical research. See more in [[IgA]], [[Monoclonal Antibody]]. For Anti-HIV Fab see [[Human Fab PG16]]. | | '''Antibodies''', also known as '''Immunoglobulins''' (Ig) are gamma globulin proteins, primarily found in the blood of vertebrates. These [[glycoproteins]] serve as a critical component of the immune system when the host fails to activate alternative compliment pathways or phagocytic cells in response to invading microorganisms or other [http://en.wikipedia.org/wiki/Antigen antigens]. The incredible specificity with which immunoglobulins bind to an antigen is based upon structural complementarity between the antigen and antibody <scene name='Antibody/1hzh_heavy_chains/1'>heavy </scene>and <scene name='Antibody/1hzh_light_chains/1'>light chains </scene>. It is this specificity that has made <scene name='Antibody/1hzh_starting_scene/3'>antibodies</scene> a critical component in laboratory and medical research. <br /> |
| | *'''Humanized mouse antibody (hmFab)''' is a modified mFab which resembles more hFab.<br /> |
| | *'''Broadly neutralizing Fab''' and '''Neutralizing Fab''' are anti-virus Fab. <br /> |
| | *'''Intrabody''' is intracellular antibody. <br /> |
| | *'''Sybody''' is synthetic nanobody (syVHH).<br /> |
| | *'''Diabody''' is a recombinant bispecific antibody constructed from heterogenous single chain antibody. <br /> |
| | *'''Lama antibodies''' or '''nanobodies''' or '''camelid''' or '''VHH''' are natural single-domain antibodies containing just the heavy chain.<br /> |
| | *'''scFv''' is a '''single chain variable fragment''' in a fusion protein of the variable regions of the heavy and light chains of immunoglobulin. <br /> |
| | *'''VH domain''' is the variable domain of the antibody heavy chain.<br /> |
| | *'''Bispecific antibody''' or '''biparatopic antibody''' can bind to two epitopes of an antigen simultaneously.<br /> |
| | *'''Polyclonal antibodies''' are a mixture of antibodies that bind to several epitopes of an antigen simultaneously.<br /> |
| | *'''Ultralong antibody''' is found in bovine. It has unusually long CDR H3 regions and has more effective defence against disease than typical antibodis <br /> |
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| | See more in<br /> |
| | [[IgA]]<br /> |
| | [[IgG Branco]]<br /> |
| | [[Monoclonal Antibody]].<br /> |
| | For Anti-HIV-1 antibodies see [[Human Fab PG16]] and [[VRC01 gp120 complex|VRC01 and VRC01-like antibodies are important in neutralizing HIV-1]]<br /> |
| | For Anti-VEGF Fab see [[Bevacizumab]] (Avastin)<br /> |
| | For Anti-factor IX Fab see [[Conformation-specific anti-Factor IX antibodies]]<br /> |
| | For blue luminescent Fab see [[Blue Luminescent Antibody Derived from House Mouse]]<br /> |
| | For Anti-vitamin Fab see [[MR1 Binds Vitamin Metabolites]]<br />. |
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| {{TOC limit|limit=2}}
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| [[Image:230px-B cell activation2.png|270px|left|thumb| Production of Antibodies by Plasma Cells]] | | [[Image:230px-B cell activation2.png|270px|left|thumb| Production of Antibodies by Plasma Cells]] |
| {{Clear}} | | {{Clear}} |
| | | __TOC__ |
| ==Cellular Basis of Antibody Production== | | ==Cellular Basis of Antibody Production== |
| When a foreign antigen binds to a B-lymphocyte ([http://en.wikipedia.org/wiki/B_cell B-cell]), it activates the B-cell, and upon stimulation by [http://en.wikipedia.org/wiki/Helper_t_cell helper T-cells], undergoes clonal proliferation and B-cell maturation into antibody forming [http://en.wikipedia.org/wiki/Plasma_cells plasma cells]. Each plasma cell is programmed to make an antibody of a single specificity, which it releases into the blood. <ref name="Roit"> Roit, I. M. Roit's Essential Immunology. Oxford: Blackwell Science Ltd., 1997.</ref> Once in the blood, antibodies aid [http://en.wikipedia.org/wiki/Humoral_immune_system the humoral immune system] in three predominant ways: They coat foreign pathogens preventing them from entering healthy cells or disrupting antigen function; they coat pathogens, stimulating their removal via [http://en.wikipedia.org/wiki/Opsonization opsonization] by [http://en.wikipedia.org/wiki/Phagocytes phagocytes]; and they trigger destruction of pathogens by stimulating the [http://en.wikipedia.org/wiki/Complement_system complement pathway] or by [http://en.wikipedia.org/wiki/Antibody-dependent_cellular_cytotoxicity Antibody Dependent Cell-mediated Cytotoxicity], among other immune responses. <ref>PMID:8476565</ref> <ref>PMID:16234578</ref> All of these functions rely heavily on accurate antigen binding and communication with other immune effector cells. The amazing specificity antibodies operate with is made possible by the physical structure of the antibody, which appears simplistic, but contains several levels of additional complexity. | | When a foreign antigen binds to a B-lymphocyte ([http://en.wikipedia.org/wiki/B_cell B-cell]), it activates the B-cell, and upon stimulation by [http://en.wikipedia.org/wiki/Helper_t_cell helper T-cells], undergoes clonal proliferation and B-cell maturation into antibody forming [http://en.wikipedia.org/wiki/Plasma_cells plasma cells]. Each plasma cell is programmed to make an antibody of a single specificity, which it releases into the blood. <ref name="Roit"> Roit, I. M. Roit's Essential Immunology. Oxford: Blackwell Science Ltd., 1997.</ref> Once in the blood, antibodies aid [http://en.wikipedia.org/wiki/Humoral_immune_system the humoral immune system] in three predominant ways: They coat foreign pathogens preventing them from entering healthy cells or disrupting antigen function; they coat pathogens, stimulating their removal via [http://en.wikipedia.org/wiki/Opsonization opsonization] by [http://en.wikipedia.org/wiki/Phagocytes phagocytes]; and they trigger destruction of pathogens by stimulating the [http://en.wikipedia.org/wiki/Complement_system complement pathway] or by [http://en.wikipedia.org/wiki/Antibody-dependent_cellular_cytotoxicity Antibody Dependent Cell-mediated Cytotoxicity], among other immune responses. <ref>PMID:8476565</ref> <ref>PMID:16234578</ref> All of these functions rely heavily on accurate antigen binding and communication with other immune effector cells. The amazing specificity antibodies operate with is made possible by the physical structure of the antibody, which appears simplistic, but contains several levels of additional complexity. |
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| <scene name='Antibody/Rituxan_starting_scene/1'>Crystal structure of Rituximab Fab in complex with an epitope peptide</scene> ([[2osl]]). | | <scene name='Antibody/Rituxan_starting_scene/1'>Crystal structure of Rituximab Fab in complex with an epitope peptide</scene> ([[2osl]]). |
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| === Antibody Diversity ===
| | == Antibody Diversity == |
| Considering the nearly infinite number of possible antigens that can invade the body, the immune system had to develop a method for accurately targeting each one of these compounds, ranging from small molecules, to stray proteins, to viruses capable of infecting cells. The antibody was the immune systems response to this problem. It has been estimated that humans generate about 10^10 different antigens, each capable of binding a unique epitope of an antigen. Since antibodies are proteins, and proteins are controlled by the genes from which they are transcribed, a clever system of gene shuffling and manipulations developed to enable the immune system to create a huge repertoire of antibodies from a limited number of genes. <ref>PMID:8612345</ref> The variable region of each immunoglobulin chain is encoded in several pieces known as gene segments. For heavy chains, these segments are called the variable (V), diversity (D), and joining (J) segments. (Only V and J exist for light chains) 50 V segments, 25 D segments, and 6 J segments exist and are randomly arranged and rearranged in the genome in a process called [http://en.wikipedia.org/wiki/VDJ_recombination V(D)J recombination]. Each B-cell is programmed to produce antibodies of a single V(D)J recombination order. | | Considering the nearly infinite number of possible antigens that can invade the body, the immune system had to develop a method for accurately targeting each one of these compounds, ranging from small molecules, to stray proteins, to viruses capable of infecting cells. The antibody was the immune systems response to this problem. It has been estimated that humans generate about 10^10 different antigens, each capable of binding a unique epitope of an antigen. Since antibodies are proteins, and proteins are controlled by the genes from which they are transcribed, a clever system of gene shuffling and manipulations developed to enable the immune system to create a huge repertoire of antibodies from a limited number of genes. <ref>PMID:8612345</ref> The variable region of each immunoglobulin chain is encoded in several pieces known as gene segments. For heavy chains, these segments are called the variable (V), diversity (D), and joining (J) segments. (Only V and J exist for light chains) 50 V segments, 25 D segments, and 6 J segments exist and are randomly arranged and rearranged in the genome in a process called [http://en.wikipedia.org/wiki/VDJ_recombination V(D)J recombination]. Each B-cell is programmed to produce antibodies of a single V(D)J recombination order. |
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| The last two decades have seen a dramatic increase in antibody based technologies both for the lab and medicine thanks to the invention of the monoclonal antiboy, a discovery that won Niels K. Jerne, Georges J.F. Köhler, César Milstein the [http://nobelprize.org/nobel_prizes/medicine/laureates/1984/press.html Nobel Prize in Medicine in 1984]. See: [[Monoclonal Antibody]] for additional information. | | The last two decades have seen a dramatic increase in antibody based technologies both for the lab and medicine thanks to the invention of the monoclonal antiboy, a discovery that won Niels K. Jerne, Georges J.F. Köhler, César Milstein the [http://nobelprize.org/nobel_prizes/medicine/laureates/1984/press.html Nobel Prize in Medicine in 1984]. See: [[Monoclonal Antibody]] for additional information. |
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| | ==3D structures of antibody== |
| | [[3D structures of antibody]] |
| </StructureSection> | | </StructureSection> |
| | __NOTOC__ |
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| == 3D Structures of Immunoglobulin == | | ==3D Printed Physical Model of an Anitbody== |
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| Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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| Humanized mouse antibody (hmFab) is a modified mFab which resembles more hFab.
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| ===Fab===
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| [[7fab]], [[1mco]], [[3na9]], [[3lrs]], [[3mme]], [[3hi5]], [[1vge]], [[3nfs]], [[1ad0]], [[3w9d]], [[4nm4]], [[8fab]], [[1opg]], [[4fnl]], [[4fqh]], [[1om3]], [[1aqk]], [[2hff]], [[2agj]], [[3hc0]], [[3g6a]], [[3dgg]], [[3dif]], [[1b2w]], [[3eyo]], [[3eyq]], [[2aj3]], [[3fzu]], [[3aaz]], [[3gje]] - hFab - human<br />
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| [[3naa]], [[3nab]], [[3nac]], [[3ncj]], [[3o2v]], [[3hc3]], [[3hc4]] - hFab (mutant)<br />
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| [[3i75]], [[1nqb]], [[1f4w]], [[1aif]], [[1ghf]], [[2z91]], [[1ind]], [[3bkc]], [[3bkm]], [[1iy0]], [[3pp3]], [[3pp4]], [[3okm]], [[6fab]], 2hkh]], [[1ay1]], [[1nbv]], [[1qbm]], [[1bbd]], [[1dsf]], [[1gpo]], [[1mnu]], [[1igf]], [[1for]], [[1k6q]], [[1bz7]], [[1dqd]], [[2ipt]], [[2iq9]], [[2iqa]], [[2w60]], [[2w9d]], [[3iu4]], [[1q9k]], [[1q9l]], [[1q9o]], [[2z4q]], [[1cl7]], [[1n4x]], [[1cr9]], [[1r24]], [[1gig]], [[1uyw]], [[1cgs]], [[2cgr]], [[1q0x]], [[1ibg]], [[3eo0]], [[2op4]], [[2q76]], [[2ojz]], [[2g60]], [[2dbl]], [[1dbj]], [[1dbk]], [[1dbm]], [[1dba]], [[1mrc]], [[2gcy]], [[1flr]], [[1uz6]], [[1rfd]], [[1t2q]], [[1ggb]], [[1ggc]], [[1bm3]], [[2eh7]], [[2fat]], [[3cfc]], [[1fl3]], [[3cfe]], [[4j1u]], [[4gq9]], [[3qg7]], [[3rvt]], [[3s62]], [[4gay]] - mFab – mouse<br />
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| [[3eot]], [[2d03]], [[3esv]], [[3et9]] – mFab (mutant)<br />
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| [[3iy2]], [[3iy3]], [[3iy4]], [[3iy5]], [[3iy6]], [[3iy7]] - mFab – Cryo EM<br />
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| [[1jpt]], [[3mxv]], [[2o5x]], [[1ucb]], [[1bbj]], [[1t04]], [[2fgw]], [[1fvd]], [[1fve]] - hmFab <br />
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| [[1cqk]] – mFab MAK33 CH3 domain<br />
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| [[3mj8]], [[3r06]] – AhFab – Armenian hamster<br />
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| [[3iy1]], [[1zan]] – rFab – rat<br />
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| [[4k3e]], [[4k3d]] – bFab – bovine<br />
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| [[4b41]], [[1shm]], [[2xa3]] – LgFab – ''Lama glama''<br />
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| [[1f2x]] – cFab – camel<br />
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| ===Anti-HIV Fab===
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| [[1rz7]], [[1rz8]], [[1rzf]], [[1rzg]], [[1rzi]], [[3mlj]], [[3mug]], [[3juy]], [[3qeh]], [[3ttn]], [[rpi]], [[3tnm]], [[4fz8]], [[4f58]], [[4f57]], [[4f5a]] - hFab <br />
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| [[3nz8]], [[3o6k]], [[3ntc]], [[3qeg]] – mFab <br />
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| ===Fab: small molecule complex===
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| [[3o2w]] - hFab 1e9 (mutant) + transition state analog<br />
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| [[3ra7]] – mFab + digoxigenin – mouse<br />
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| [[3okd]], [[3oke]], [[3okk]], [[3okl]], [[3okn]], [[3oko]], [[3hzk]], [[3hzm]], [[3hzv]], [[3hzy]], [[3pho]], [[3phq]], [[3hns]], [[3hnt]], [[3hnv]] - mFab + liposaccharide<br />
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| [[3oau]] – hFab 2g12 (mutant) + mannose<br />
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| [[1ikf]] – hFab R45 + cyclosporin<br />
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| [[3oay]], [[3oaz]], [[3ob0]], [[1zls]], [[1zlu]], [[1zlv]], [[1zlw]] - hFab 2g12 + glycan<br />
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| [[2jb5]], [[2jb6]] - hFab/mFab + hapten<br />
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| [[1ine]], [[1ub5]], [[1ub6]] - mFab + hapten<br />
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| [[3ls4]] – mFab + tetrahydrocannabinol<br />
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| [[1mfc]], [[1mfd]], [[1mfe]], [[4hgw]] – mFab + polysaccharide<br />
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| [[1op3]], [[1op5]] - hFab + polysaccharide<br />
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| [[3eyv]] - hFab/mFab 13G5 (mutant) + hapten<br />
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| [[2ntf]] - mFab RS2-1G9 + lactone analog<br />
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| [[1riu]], [[1riv]], [[1qyg]], [[1q72]] - mFab + cocaine derivative<br />
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| [[1ynk]], [[1ynl]], [[1etz]] – mFab + sweetener<br />
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| [[1yef]] – mFab D2.3 + substrate analog<br />
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| [[1yeg]] - mFab D2.3 + product<br />
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| [[1p7k]] – mFab + HEPES<br />
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| [[1q0y]] – mFab 9B1 + morphine<br />
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| [[1q9q]], [[1q9r]], [[1q9t]], [[1q9v]], [[1q9w]], [[1f4x]], [[1f4y]], [[1mfa]], [[1mfb]] - mFab + carbohydrate<br />
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| [[1mex]] – mFab 29G12 + benzoic acid derivative<br />
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| [[1mrd]], [[1mre]], [[1mrf]] – mFab JEL103 + nucleotide<br />
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| [[1dbb]] – mFab DB3 + progesterone<br />
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| [[1igj]] - mFab 26-10 + digoxin<br />
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| [[4fab]] – mFab 4-4-20 + fluorescin<br />
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| [[1dl7]] - mFab MCPC603 + phosphocholine<br />
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| [[3cfb]], [[3cfd]], [[2g2r]] – mFab + stilbene hapten<br />
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| [[1i3u]], [[1i3v]] - LgFab + hapten<br />
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| ===Fab: peptide complex===
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| [[3e8u]] - mFab + BNP peptide<br />
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| [[2a6d]], [[2a6i]], [[2a6j]], [[2a6k]] - mFab + peptide<br />
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| [[3hr5]] – mFab + M1prime peptide<br />
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| [[3eys]], [[3eyu]] - mFab + amyloid-β-related peptide<br />
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| [[3ggw]] – mFab + carbohydrate-mimetic peptide<br />
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| [[3cxd]], [[3dsf]] – mFab + osteopontin peptide<br />
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| [[2zpk]] – mFab + proteinase-activated receptor peptide<br />
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| [[3ifl]], [[3ifn]], [[3ifo]], [[3ifp]] - mFab + amyloid peptide<br />
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| [[3h0t]] - hFab + hepcidin peptide<br />
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| [[1sm3]] - hFab SM3 + peptide<br />
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| [[3eyf]] – hFab + cytomegalovirus peptide<br />
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| [[2hfg]], [[2h9g]] – hFab + TNF receptor peptide<br />
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| [[3csy]] - hFab + Ebola envelope glycoprotein peptide<br />
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| [[2eh8]] - mFab + PRES1 peptide<br />
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| [[2brr]] – mFab + outer membrane protein peptide<br />
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| [[1xgy]] – mFab + rhodopsin peptide<br />
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| [[1pz5]] – mFab SYA/J6 + peptide<br />
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| [[1a3r]] – mFab + rhinovirus capsid peptide<br />
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| [[1cu4]] - mFab + prion protein peptide<br />
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| [[1fpt]] – mFab + poliovirus peptide<br />
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| [[1jp5]] – mFab + HIV-1 protease peptide<br />
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| [[1mvu]] – mFab + glycoprotein <br />
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| [[2ap2]] – mFab + glycoprotein peptide + C-myc peptide<br />
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| [[2hh0]] – hFab/mFab + prion protein peptide<br />
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| [[1frg]], [[1him]], [[1hin]], [[1ifh]] - mFab + hemagglutinin peptide<br />
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| [[1tet]] – mFab + cholera toxin peptide<br />
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| [[1i8i]], [[1i8k]] – mFab + EGFR peptide<br />
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| [[1i8k]] – mFab + EGFR peptide<br />
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| [[1i8i]], [[1i8k]] – mFab + EGFR peptide<br />
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| [[1i8k]] – mFab + EGFR peptide<br />
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| [[4gag]], [[4gaj]] – mFab + genome polyprotein peptide<br />
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| [[3bky]] – hFab/mFab + CD20 peptide<br />
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| [[4hs8]] – hFab + hepatitis virus peptide <br />
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| ===Anti-HIV Fab: peptide complex===
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| [[3egs]], [[3drt]], [[3drq]], [[3dro]], [[2fx7]], [[2fx8]], [[2fx9]], [[2cmr]], [[1tzg]], [[1tjg]], [[3mnw]], [[3moa]], [[3mob]], [[3mod]], [[1tjh]], [[1tji]], [[1u8h]], [[1u8i]], [[1u8j]], [[1u8k]], [[1u8l]], [[1u8m]], [[1u8n]], [[1u8o]], [[1u8p]], [[1u8q]], [[1u91]], [[1u92]], [[1u93]], [[1u95]], [[2f5b]] - hFab anti-HIV + gp41 peptide<br />
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| [[3ghb]], [[3ghe]], [[3c2a]] - hFab anti-HIV + envelope glycoprotein peptide<br />
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| [[3go1]] - hFab anti-HIV + envelope glycoprotein gp160 peptide<br />
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| [[3fn0]], [[2oqj]] - hFab + peptide<br />
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| [[2b0s]], [[2b1a]], [[2b1h]], [[3se8]], [[3se9]], [[4jkp]], [[4jpv]], [[4jb9]] - hFab anti-HIV + glycoprotein gp120 peptide<br />
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| [[1nak]], [[2f58]], [[3f58]], [[1f58]], [[1acy]], [[1qnz]] - mFab anti-HIV + glycoprotein gp120 peptide<br />
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| [[1ai1]], [[1ggi]] – mFab anti-HIV + V3 peptide<br />
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| [[3o6l]], [[3o6m]] - mFab 11H6H1 anti-HIV + Tat peptide<br />
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| [[1svz]] - mFab anti-HIV + HIV-2 protease peptide<br />
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| ===Fab: protein complex===
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| [[3raj]] – mFab HB7 + CD38<br />
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| [[3o0r]] – mFab + nitric oxide reductase<br />
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| [[3mac]], [[3ma9]] – hFab 8062 anti-HIV + transmembrane glycoprotein<br />
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| [[3pnw]] – hFab + Tudor domain-containing protein 3<br />
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| [[3h42]] - hFab LDLR + proprotein convertase subtilisin/kexin<br />
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| [[3nh7]] – hFab ABD1556 + bone morphogenetic protein receptor<br />
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| [[3hi6]] – hFab AL-57 + integrin<br />
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| [[2vxs]] - hFab + interleukin<br />
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| [[3b2u]], [[3b2v]] – hFab IMC-11F8 + EGFR<br />
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| [[2r0k]], [[2r0l]] – hFab + HGFA<br />
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| [[3ld8]], [[3ldb]] – AhFab + bifunctional arginine demethylase <br />
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| [[3be1]], [[3n85]], [[1n8z]] - hFab + ERBB-2<br />
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| [[3kr3]] – hFab + IGF-II<br />
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| [[3g6d]] – hFab CNTO607 + IL-13<br />
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| [[3idx]], [[3idy]], [[2ny7]], [[4jpw]], [[4lsp]], [[4lsq]], [[4lsr]], [[4lss]], [[4lst]], [[4lsu]], [[4lsv]] - hFab + gp120 core<br />
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| [[2x7l]] – Fab anti-HIV + HIV REV<br />
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| [[3gbm]], [[3gbn]], [[3lzf]], [[3fku]], [[3sdy]], [[3ztj]], [[3ztn]], [[4fp8]], [[4fqi]], [[4fqj]], [[4fqk]], [[4fql]], [[4fqr]], [[4fqv]], [[4fqy]], [[4gxu]], [[4nm8]]- hFab + hemagglutinin<br />
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| [[3g6j]] – hFab + complement C3<br />
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| [[2vxq]] – hFab + pollen allergen PHL<br />
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| [[1fsk]] - mFab + pollen allergen<br />
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| [[2wub]], [[3k2u]] – hFab 40 + hepatocyte growth factor activator<br />
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| [[3grw]] - hFab + fibroblast growth factor receptor<br />
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| [[3bdy]], [[2qr0]], [[2fjg]], [[2fjh]], [[1cz8]] – hFab + VEGF<br />
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| [[1tzh]], [[1tzi]] - mFab + VEGF<br />
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| [[3bqu]] – hFab 2F5 anti-HIV + mFab 3H6<br />
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| [[1adq]] – hFab IGM + igG1 Fc<br />
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| [[3dvg]], [[3dvn]] – hFab igG1 + ubiquitin<br />
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| [[3bn9]] – hFab E2 + membrane-type serine protease<br />
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| [[2jix]] – hFab ABT-007 + erythropoietin receptor<br />
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| [[1za3]] - hFab YSD1 + TNF receptor<br />
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| [[3l95]] – Fab + NRR1<br />
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| [[1uj3]], [[4dtg]] – hFab + tissue factor<br />
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| [[3lev]] – hFab 2F5 + RNA polymerase sigma factor<br />
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| [[3ru8]] – hFab B12 + epitope scaffold 2BODX43<br />
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| [[3skj]] – hFab + ephrin receptor<br />
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| [[3sob]] – hFab + LPR6<br />
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| [[3vg9]] – hFab + adenosine receptor<br />
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| [[3vga]] – hFab + adenosine receptor (mutant)<br />
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| [[2qqk]], [[2qql]], [[2qqn]] – hFab + neuropilin<br />
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| [[2vyr]] – hFab + MDM4<br />
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| [[4c2i]] – hFab + dengue virus envelope protein<br />
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| [[4dag]] – hFab + metapneumovirus glycoprotein F0<br />
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| [[1jps]] - hmFab D3H44 + tissue factor<br />
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| [[1ahw]] - mFab 5G9+ tissue factor<br />
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| [[1eo8]], [[1ken]], [[4mhh]], [[4mhj]] - mFab + hemagglutinin<br />
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| [[2w9e]], [[1tpx]], [[1tqb]], [[1tqc]] – mFAB + major prion protein<br />
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| [[2oz4]] – mFab + intercellular adhesion molecule<br />
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| [[3eo1]] - mFab GC-1008 + transforming growth factor β-3<br />
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| [[2dtg]] – mFab 83 + insulin receptor<br />
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| [[1egj]] – mFab + cytokine receptor<br />
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| [[2bdn]] – mFab + cytokine A2<br />
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| [[1jrh]] – mFab + interferon-γ receptor<br />
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| [[1ob1]] – mFab + major merozoite surface protein<br />
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| [[1qfw]] – mFab + gonadotropin<br />
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| [[4cad]] – mFab + RCE1<br />
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| [[4m48]] – mFab + dopamine transporter<br />
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| [[1yjd]] – mFab 5.11A1 + CD28<br />
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| [[1sy6]] – mFab OKT3 + CD3<br />
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| [[4k4m]], [[4k2u]] – mFab + erythrocyte binding antigen<br />
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| [[1afv]] – mFab anti-HIV + capsid protein C<br />
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| [[2b2x]] – rFab AQC2 + integrin<br />
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| [[2r56]] – bFab igE + β-lactoglobulin <br />
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| [[1bzq]], [[2p42]], [[2p43]], [[2p44]], [[2p45]], [[2p46]], [[2p47]], [[2p48]], [[2p49]], [[2p4a]] – bFab Cab-Rn05 + RNase<br />
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| [[2r9h]] – mFab + exchange transporter ClCA<br />
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| [[1nca]], [[1ncb]], [[1ncc]], [[1ncd]] – mFab + neuraminidase<br />
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| [[1rjl]] – mFab + outer surface protein<br />
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| [[1mhh]] – mFab + protein L (mutant)<br />
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| [[1pg7]] – mFab 6A6 + hmFab D3H44<br />
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| [[1pkq]] – hFab/mFab 8-18C5 + myelin glycoprotein<br />
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| [[2jel]] – mFab JEL42 + histidine-containing protein<br />
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| [[1nsn]] – mFab N10 + nuclease<br />
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| [[1rvf]] – mFab 17-IA + intact rhinovirus<br />
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| [[3j3o]], [[3j3p]]- mFab + poliovirus proteins – cryoEM<br />
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| [[1nfd]] – mFab H57 + T-cell receptor<br />
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| [[1igc]] – mFab MOPC21 + streptococcal protein G<br />
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| [[1iai]] – mFab idiotipic + mFab anti-idiotypic<br />
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| [[2r8s]] – mFab + RNA<br />
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| [[2fr4]], [[1xf2]], [[1xf3]], [[1xf4]], [[1i8m]], [[1cbv]] – mFab + DNA<br />
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| [[1mhp]], [[3q3g]], [[3qa3]] – mFab + integrin<br />
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| [[3ab0]] – mFab + BCLA protein<br />
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| [[3etb]] – mFab M18 (mutant) + anthrax-protective antigen<br />
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| [[3f5w]], [[3pjs]], [[3efd]], [[3eff]], [[2hjf]], [[2w0f]], [[4msw]] – mFab + KcsA K+ channel<br />
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| [[3stl]], [[3stz]], [[4i9w]] - mFab + KcsA K+ channel (mutant)<br />
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| [[1kb5]] – mFab + T-cell receptor<br />
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| [[4i18]] – mFab + pro-lactin receptor<br />
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| [[1uwx]] – mFab + protein G prime <br />
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| [[4ckd]] – mFab + β-galactosidase <br />
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| [[3fmg]] – mFab + glycoprotein VP7<br />
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| [[3ve0]] - mFab + Ebola envelope glycoprotein<br />
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| [[3k7u]], [[3k80]] – LgFab + MP18 RNA editing protein – Lama glama<br />
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| [[3mj9]] – AhFab HL4E10 + JAML <br />
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| [[3r08]] - AhFab 2C11 + CD3ε<br />
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| [[4hti]] – rFab + TNF ligand<br />
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| [[1g6v]] – bFab + carbonic anhydrase<br />
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| [[4hgk]] – Fab + albumin – shark<br />
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| [[4ej1]], [[4eiz]], [[4eig]] – LgFab + DHFR <br />
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| [[3k81]], [[3stb]], [[4dk3]], [[4dk6]], [[4dka]] – LgFab + RNA editing complex protein<br />
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| [[3p0g]], [[4lde]], [[4ldl]], [[4ldo]] – LgFab + adrenergic receptor<br />
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| [[1jto]], [[1jtp]], [[1jtt]], [[1ri8]], [[1xfp]], [[1zmy]], [[1zv5]], [[1zvh]] – cFab + lysozyme<br />
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| [[2x89]] – cFab + β-2-microglobulin<br />
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| [[4i0c]] – cFab + lysozyme<br />
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| [[4ht1]] – Fab + TNF ligand 12 – rabbit<br />
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| ===Fab: protein ternary complex===
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| [[3ixx]], [[3ixy]] - mFab E53 + envelope glycoprotein + West Nile virus peptide<br />
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| [[1g9m]], [[1g9n]], [[1gc1]], [[2i5y]], [[2i60]], [[2nxy]], [[2nxz]], [[2ny0]], [[2ny1]], [[2ny2]], [[2ny3]], [[2ny4]], [[2ny5]], [[2ny6]], [[3jwd]], [[3jwo]] - hFab + envelope glycoprotein gp120 + CD4<br />
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| [[2wuc]] - hFab 40 + hepatocyte growth factor activator + inhibitor<br />
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| [[3lqa]], [[2qad]] - hFab anti-HIV + CD4 + gp160<br />
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| [[3d85]] - hFab 7G10 + IL-12 + IL-23<br />
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| [[3bt2]] – hFab anti-UPAR + urokinase-type plasminogen activator + vitronectin<br />
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| [[3gjf]], [[3hae]] – hFab + β-2-microglobulin + MHC antigen + NYESO peptide<br />
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| [[3gb7]], [[2p7t]], [[2h8p]], [[2hfe]], [[2atk]] - mFab + KcsA K+ channel + ion<br />
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| [[3or6]], [[3or7]], [[3ogc]], [[3fb7]], [[3f7v]], [[3f7y]], [[3fb5]], [[3fb6]], [[3fb8]], [[3iga]], [[2itc]], [[2itd]], [[2nlj]], [[2bob]], [[2boc]], [[1s5h]], [[1r3i]], [[1r3j]], [[1r3k]], [[1r3l]], [[1k4c]], [[1k4d]], [[3hpl]] - mFab + KcsA K+ channel (mutant) + ion<br />
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| [[2fd6]] – mFab ATN-615 + urokinase-type plasminogen activator + urokinase plasminogen receptor<br />
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| [[1j5o]] – mFab + reverse transcriptase + DNA<br />
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| [[1qkz]] – mFab + protein G prime + major outer membrane protein peptide<br />
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| [[2ibz]] – mFab + cytochrome bc1 complex + stigmatellin <br />
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| [[3v0a]] – LgFab + BONT/A1 + NTNH<br />
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| [[3sn6]] – LgFab + adrenergic receptor + guanine nucleotide-binding protein<br />
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| [[4laj]] - LgFab + envelope glycoprotein gp120 + CD4<br />
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| ===Full Immunoglobulin===
| | Shown below is a 3D printed physical model of an Antibody. The protein is displayed as an alpha carbon backbone, with the heavy chains colored white, the light chains colored red, and the glycan colored blue. |
| | [[Image:antibody1_centerForBioMolecularModeling.jpg|550px]] |
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| [[1hzh]] - hFab IgG B12<br />
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| [[1iga]] - hIgA1 - model<br />
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| ===Fc Fragments=== | | ====The MSOE Center for BioMolecular Modeling==== |
|
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| [[3dnk]] - hFc Igg1br /> | | [[Image:CbmUniversityLogo.jpg | left | 150px]] |
| [[1qp1]] – hFc BRE<br />
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| [[3muh]] – hFc PG9<br />
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| [[4bsv]], [[4bsw]] – hFc heterodimeric (mutant)<br />
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| [[1f6a]] - hFc IgE + high-affinity receptor Fc (ε) RI (α)<br />
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| [[1fp5]] - hFc IgE C ε 3-C ε 4<br />
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| ===Fv Fragments===
| | The [http://cbm.msoe.edu MSOE Center for BioMolecular Modeling] uses 3D printing technology to create physical models of protein and molecular structures, making the invisible molecular world more tangible and comprehensible. To view more protein structure models, visit our [http://cbm.msoe.edu/educationalmedia/modelgallery/ Model Gallery]. |
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| [[3dur]], [[3dus]], [[3duu]], [[3dv4]], [[3dv6]] – mFv + Ig-like protein<br />
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| [[3h3b]] – mFv + ERBB2<br />
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| [[3hb3]] – mFv + cytochrome c oxidase subunit 1-β<br />
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| [[1qle]] - mFv + cytochrome c oxidase<br />
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| [[3ln9]] – cFv B10<br />
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| [[3tpk]] – cFv KW1<br />
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| [[3zhd]], [[3zhk]], [[3zhl]] – hFv scaffold<br />
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| [[1kxq]] – cFv + α-amylase<br />
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| [[1mel]], [[1rjc]], [[1zvy]] – cFv + lysozyme<br />
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| ==References== | | ==References== |