3gc2: Difference between revisions

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-{{Seed}}
-[[Image:3gc2.png|left|200px]]
-<!--
+==1.85 Angstrom Crystal Structure of O-succinylbenzoate Synthase from Salmonella typhimurium in Complex with Succinic Acid==
-The line below this paragraph, containing "STRUCTURE_3gc2", creates the "Structure Box" on the page.
+<StructureSection load='3gc2' size='340' side='right'caption='[[3gc2]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3gc2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GC2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GC2 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SIN:SUCCINIC+ACID'>SIN</scene></td></tr>
-{{STRUCTURE_3gc2|  PDB=3gc2  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gc2 OCA], [https://pdbe.org/3gc2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gc2 RCSB], [https://www.ebi.ac.uk/pdbsum/3gc2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gc2 ProSAT], [https://www.topsan.org/Proteins/CSGID/3gc2 TOPSAN]</span></td></tr>
+</table>
-===1.85 Angstrom Crystal Structure of O-succinylbenzoate Synthase from Salmonella typhimurium in Complex with Succinic Acid===
+== Function ==
+[https://www.uniprot.org/uniprot/MENC_SALTY MENC_SALTY] Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 2-succinylbenzoate (OSB).[HAMAP-Rule:MF_00470]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-GC2 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GC2 OCA].
+Check<jmol>
-[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+  <jmolCheckbox>
-[[Category: O-succinylbenzoate synthase]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gc/3gc2_consurf.spt"</scriptWhenChecked>
-[[Category: Anderson, W F.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Minasov, G.]]
+  </jmolCheckbox>
-[[Category: Onopriyenko, O.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gc2 ConSurf].
-[[Category: Peterson, S N.]]
+<div style="clear:both"></div>
-[[Category: Savchenko, A.]]
+__TOC__
-[[Category: Skarina, T.]]
+</StructureSection>
-[[Category: Wawrzak, Z.]]
+[[Category: Large Structures]]
-[[Category: Center for structural genomics of infectious disease]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-[[Category: Csgid]]
+[[Category: Anderson WF]]
-[[Category: Idp00994]]
+[[Category: Minasov G]]
-[[Category: Lyase]]
+[[Category: Onopriyenko O]]
-[[Category: Magnesium]]
+[[Category: Peterson SN]]
-[[Category: Menaquinone biosynthesis]]
+[[Category: Savchenko A]]
-[[Category: Metal-binding]]
+[[Category: Skarina T]]
-[[Category: Structural genomic]]
+[[Category: Wawrzak Z]]
-[[Category: Succinic acid]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 28 11:41:20 2009''