3ffy: Difference between revisions

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-[[Image:3ffy.png|left|200px]]
-{{STRUCTURE_3ffy|  PDB=3ffy  |  SCENE=  }}
+==Putative tetrapyrrole (corrin/porphyrin) methyltransferase from Bacteroides fragilis.==
+<StructureSection load='3ffy' size='340' side='right'caption='[[3ffy]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-===Putative tetrapyrrole (corrin/porphyrin) methyltransferase from Bacteroides fragilis.===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3ffy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_NCTC_9343 Bacteroides fragilis NCTC 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FFY FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[3ffy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis Bacteroides fragilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FFY OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ffy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ffy OCA], [https://pdbe.org/3ffy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ffy RCSB], [https://www.ebi.ac.uk/pdbsum/3ffy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ffy ProSAT], [https://www.topsan.org/Proteins/MCSG/3ffy TOPSAN]</span></td></tr>
-[[Category: Bacteroides fragilis]]
+</table>
-[[Category: Cobb, G.]]
+== Function ==
-[[Category: Joachimiak, A.]]
+[https://www.uniprot.org/uniprot/Q5LHP3_BACFN Q5LHP3_BACFN] Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.[HAMAP-Rule:MF_01877]
-[[Category: Kim, Y.]]
+== Evolutionary Conservation ==
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Osipiuk, J.]]
+Check<jmol>
-[[Category: Volkart, L.]]
+  <jmolCheckbox>
-[[Category: Apc62130 1]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ff/3ffy_consurf.spt"</scriptWhenChecked>
-[[Category: Mcsg]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Methyltransferase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Midwest center for structural genomic]]
+  </jmolCheckbox>
-[[Category: Protein structure initiative]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ffy ConSurf].
-[[Category: Psi-2]]
+<div style="clear:both"></div>
-[[Category: Structural genomic]]
+__TOC__
-[[Category: Unknown function]]
+</StructureSection>
+[[Category: Bacteroides fragilis NCTC 9343]]
+[[Category: Large Structures]]
+[[Category: Cobb G]]
+[[Category: Joachimiak A]]
+[[Category: Kim Y]]
+[[Category: Osipiuk J]]
+[[Category: Volkart L]]