3fdj: Difference between revisions

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 ==The structure of a DegV family protein from Eubacterium eligens.==
-<StructureSection load='3fdj' size='340' side='right' caption='[[3fdj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='3fdj' size='340' side='right'caption='[[3fdj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3fdj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27750 Atcc 27750]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FDJ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3fdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachnospira_eligens Lachnospira eligens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FDJ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ASSEMBLY.20070618:0-0:0-0 (zvnW5vjFOAACMF8NLOPRFTmWH60:01:1-275) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39485 ATCC 27750])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdj OCA], [https://pdbe.org/3fdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fdj RCSB], [https://www.ebi.ac.uk/pdbsum/3fdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdj ProSAT], [https://www.topsan.org/Proteins/MCSG/3fdj TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdj OCA], [http://pdbe.org/3fdj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fdj RCSB], [http://www.ebi.ac.uk/pdbsum/3fdj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdj ProSAT], [http://www.topsan.org/Proteins/MCSG/3fdj TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/D0VX07_9FIRM D0VX07_9FIRM] May bind long-chain fatty acids, such as palmitate, and may play a role in lipid transport or fatty acid metabolism.[ARBA:ARBA00003238]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdj_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdj_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 27750]]
+[[Category: Lachnospira eligens]]
-[[Category: Cuff, M E]]
+[[Category: Large Structures]]
-[[Category: Freeman, L]]
+[[Category: Cuff ME]]
-[[Category: Hendricks, R]]
+[[Category: Freeman L]]
-[[Category: Joachimiak, A]]
+[[Category: Hendricks R]]
-[[Category: Structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: Degv]]
-[[Category: Gut microbiome]]
-[[Category: Mcsg]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]