3fdj: Difference between revisions

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-{{Seed}}
-[[Image:3fdj.png|left|200px]]
-<!--
+==The structure of a DegV family protein from Eubacterium eligens.==
-The line below this paragraph, containing "STRUCTURE_3fdj", creates the "Structure Box" on the page.
+<StructureSection load='3fdj' size='340' side='right'caption='[[3fdj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3fdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachnospira_eligens Lachnospira eligens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FDJ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-{{STRUCTURE_3fdj|  PDB=3fdj  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdj OCA], [https://pdbe.org/3fdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fdj RCSB], [https://www.ebi.ac.uk/pdbsum/3fdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdj ProSAT], [https://www.topsan.org/Proteins/MCSG/3fdj TOPSAN]</span></td></tr>
+</table>
-===The structure of a DegV family protein from Eubacterium eligens.===
+== Function ==
+[https://www.uniprot.org/uniprot/D0VX07_9FIRM D0VX07_9FIRM] May bind long-chain fatty acids, such as palmitate, and may play a role in lipid transport or fatty acid metabolism.[ARBA:ARBA00003238]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-FDJ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eubacterium_eligens Eubacterium eligens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDJ OCA].
+Check<jmol>
-[[Category: Eubacterium eligens]]
+  <jmolCheckbox>
-[[Category: Cuff, M E.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdj_consurf.spt"</scriptWhenChecked>
-[[Category: Freeman, L.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Hendricks, R.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Joachimiak, A.]]
+  </jmolCheckbox>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fdj ConSurf].
-[[Category: Degv]]
+<div style="clear:both"></div>
-[[Category: Gut microbiome]]
+__TOC__
-[[Category: Mcsg]]
+</StructureSection>
-[[Category: Midwest center for structural genomic]]
+[[Category: Lachnospira eligens]]
-[[Category: Protein structure initiative]]
+[[Category: Large Structures]]
-[[Category: Psi-2]]
+[[Category: Cuff ME]]
-[[Category: Structural genomic]]
+[[Category: Freeman L]]
-[[Category: Unknown function]]
+[[Category: Hendricks R]]
+[[Category: Joachimiak A]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 15:12:09 2010''