Proteopedia:Cookbook: Difference between revisions
→Mix and Edit scenes from other pages: clarify pageID and use html tag to hide the page references |
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==Synchronizing molecules== | ==Synchronizing molecules== | ||
Please see [[Jmol/Synchronization]] | Please see [[Jmol/Synchronization]] | ||
==Capturing Movies== | |||
On pages titled with a [[PDB ID]], simple rocking or spinning movies can be captured using the ''Export Animated Image'' link under the molecule, or by clicking ''FirstGlance'' in the Resources block, and then clicking ''Save Image or Animation for Powerpoint'' under the molecule (see | |||
[http://firstglance.jmol.org/slides.htm overview]). | |||
Complex operations and manual movements with the mouse can be captured as movies by "screen recording". Here are [http://firstglance.jmol.org/videocapture.htm examples and instructions]. | |||
==Movies mp4== | ==Movies mp4== | ||
Click the ''Play'' icon below to start the sample movie.<br> | Click the ''Play'' icon below to start the sample movie.<br> | ||
<html5media height="300" width="300">/mp4/Resolution_holton.mp4</html5media> | <html5media height="300" width="300" loop>/mp4/Resolution_holton.mp4</html5media> | ||
{{Clear}} | {{Clear}} | ||
<pre><html5media height="300" width="300">/mp4/file.mp4</html5media></pre> | <pre><html5media height="300" width="300" loop>/mp4/file.mp4</html5media></pre> | ||
Shows the movie with the with a width of 300 and a height of 300 pixels. | Shows the movie with the with a width of 300 and a height of 300 pixels. Including "loop" makes the movie loop back to the beginning while playing. | ||
A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and | A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and clicking again resumes playing in both Mac OS X and Windows. This is | ||
useful in case the controller is not displayed ("controller=false"). | useful in case the controller is not displayed ("controller=false"). | ||
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[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1stp ConSurf]. | [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1stp ConSurf]. | ||
<!-- end of content inserted by the ConSurf template --> | <!-- end of content inserted by the ConSurf template --> | ||
==ConSurf Documentation== | |||
[[ConSurf/Index]] has a list of many articles about ConSurf and evolutionary conservation. | |||
==Combine Proteopedia scenes with JSmol scripting== | ==Combine Proteopedia scenes with JSmol scripting== | ||