Proteopedia:Cookbook: Difference between revisions
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==Synchronizing molecules== | ==Synchronizing molecules== | ||
Please see [[Jmol/Synchronization]] | Please see [[Jmol/Synchronization]] | ||
==Capturing Movies== | |||
On pages titled with a [[PDB ID]], simple rocking or spinning movies can be captured using the ''Export Animated Image'' link under the molecule, or by clicking ''FirstGlance'' in the Resources block, and then clicking ''Save Image or Animation for Powerpoint'' under the molecule (see | |||
[http://firstglance.jmol.org/slides.htm overview]). | |||
Complex operations and manual movements with the mouse can be captured as movies by "screen recording". Here are [http://firstglance.jmol.org/videocapture.htm examples and instructions]. | |||
==Movies mp4== | ==Movies mp4== | ||
Click the ''Play'' icon below to start the sample movie.<br> | Click the ''Play'' icon below to start the sample movie.<br> | ||
<html5media height="300" width="300">/mp4/Resolution_holton.mp4</html5media> | <html5media height="300" width="300" loop>/mp4/Resolution_holton.mp4</html5media> | ||
{{Clear}} | {{Clear}} | ||
<pre><html5media height="300" width="300">/mp4/file.mp4</html5media></pre> | <pre><html5media height="300" width="300" loop>/mp4/file.mp4</html5media></pre> | ||
Shows the movie with the with a width of 300 and a height of 300 pixels. | Shows the movie with the with a width of 300 and a height of 300 pixels. Including "loop" makes the movie loop back to the beginning while playing. | ||
A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and | A movie controller is also displayed at the bottom beneath the movie. If the height is too small, the controller will not be displayed. Clicking on the movie stops playing, and clicking again resumes playing in both Mac OS X and Windows. This is | ||
useful in case the controller is not displayed ("controller=false"). | useful in case the controller is not displayed ("controller=false"). | ||
== Embedded Youtube == | == Embedded Youtube == | ||
<html5media height=" | <html5media height="337" width="600">https://www.youtube.com/watch?v=Q1ftYq13XKk</html5media> | ||
<pre><html5media height=" | <pre><html5media height="337" width="600">https://www.youtube.com/watch?v=Q1ftYq13XKk</html5media></pre> | ||
== Embedded Youtube Shorts == | == Embedded Youtube Shorts == | ||
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[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1stp ConSurf]. | [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1stp ConSurf]. | ||
<!-- end of content inserted by the ConSurf template --> | <!-- end of content inserted by the ConSurf template --> | ||
==ConSurf Documentation== | |||
[[ConSurf/Index]] has a list of many articles about ConSurf and evolutionary conservation. | |||
==Combine Proteopedia scenes with JSmol scripting== | ==Combine Proteopedia scenes with JSmol scripting== | ||
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==Mix and Edit scenes from other pages== | ==Mix and Edit scenes from other pages== | ||
To load on SAT scenes from other Proteopedia pages and become able to edit them, simply insert the page ID (wgArticleId) of other pages between < | To load on SAT scenes from other Proteopedia pages and become able to edit them, simply insert the page ID (wgArticleId) of other pages between < > like this: '''<!-- /471747/ /351028/ -->''' somewhere in your page. You may insert this way as many page IDs as you want, and [[Scene_authoring_tools|SAT]] will allow you to load any scene from those pages. From that moment, any edited scene will be saved under your page, without altering the original scene nor the source page. | ||
* How to find the page ID? Edit or view the source code (wikitext) of the page from which you want to borrow the scenes, find the <code>scene</code> tag and pick the number after the first slash, e.g. that in red here: | |||
<scene name='58/<span style="color:red;">587840</span>/Cartoon_rainbow_and_water/1'>Color by group</scene> | |||
==See Also== | ==See Also== | ||