3eo4: Difference between revisions

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-{{Seed}}
-[[Image:3eo4.png|left|200px]]
-<!--
+==The crystal structure of a domain from Methanocaldococcus jannaschii DSM 2661==
-The line below this paragraph, containing "STRUCTURE_3eo4", creates the "Structure Box" on the page.
+<StructureSection load='3eo4' size='340' side='right'caption='[[3eo4]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3eo4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EO4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EO4 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.19&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE'>PG6</scene></td></tr>
-{{STRUCTURE_3eo4|  PDB=3eo4  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3eo4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3eo4 OCA], [https://pdbe.org/3eo4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3eo4 RCSB], [https://www.ebi.ac.uk/pdbsum/3eo4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3eo4 ProSAT], [https://www.topsan.org/Proteins/MCSG/3eo4 TOPSAN]</span></td></tr>
+</table>
-===The crystal structure of a domain from Methanocaldococcus jannaschii DSM 2661===
+== Function ==
+[https://www.uniprot.org/uniprot/Y1062_METJA Y1062_METJA]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-EO4 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EO4 OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eo/3eo4_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3eo4 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Methanocaldococcus jannaschii]]
-[[Category: Freeman, L.]]
+[[Category: Freeman L]]
-[[Category: Hatzos, C.]]
+[[Category: Hatzos C]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Tan K]]
-[[Category: Tan, K.]]
-[[Category: Apc60792 2]]
-[[Category: Mcsg]]
-[[Category: Methanocaldococcus jannaschii dsm 2661]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Mj_1062]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 09:56:59 2008''