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*''Proteopedia - a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules'', Eran Hodis, Jaime Prilusky, Eric Martz, Israel Silman, John Moult and Joel L Sussman.  [http://genomebiology.com/2008/9/8/R121 ''Genome Biology'' 9:R121, August 2008] or [http://dx.doi.org/10.1186/gb-2008-9-8-r121 doi:10.1186/gb-2008-9-8-r121]
*''Proteopedia - a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules'', Eran Hodis, Jaime Prilusky, Eric Martz, Israel Silman, John Moult and Joel L Sussman.  [http://genomebiology.com/2008/9/8/R121 ''Genome Biology'' 9:R121, August 2008] or [http://dx.doi.org/10.1186/gb-2008-9-8-r121 doi:10.1186/gb-2008-9-8-r121]
*''Tools to make 3D structural data more comprehensible: eMovie & Proteopedia'', Eran Hodis, Jaime Prilusky and Joel L. Sussman. [http://link.springer.com/chapter/10.1007/978-90-481-2339-1_11 ''From Molecules to Medicines'', pp. 169-182, 2009]
*''Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function'', Eran Hodis, Jaime Prilusky and Joel L. Sussman [http://iubmb.onlinelibrary.wiley.com/doi/10.1002/bmb.20431 ''Biochemistry and Molecular Biology Education'' 5:341-342, May, 2010]


*''Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules'', Jaime Prilusky, Eran Hodis, David Canner, Wayne A. Decatur, Karl Oberholser, Eric Martz, Alexander Berchanski, Michal Harel and Joel L. Sussman. [http://www.sciencedirect.com/science/article/pii/S104784771100116X ''Journal of Structural Biology'' 175:244-52, August 2011] or [http://dx.doi.org/10.1016/j.jsb.2011.04.011 doi:10.1016/j.jsb.2011.04.011].
*''Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules'', Jaime Prilusky, Eran Hodis, David Canner, Wayne A. Decatur, Karl Oberholser, Eric Martz, Alexander Berchanski, Michal Harel and Joel L. Sussman. [http://www.sciencedirect.com/science/article/pii/S104784771100116X ''Journal of Structural Biology'' 175:244-52, August 2011] or [http://dx.doi.org/10.1016/j.jsb.2011.04.011 doi:10.1016/j.jsb.2011.04.011].


*''Publishing in Proteopedia: The Guide'', Jaime Prilusky, Wayne Decatur & Eric Martz. [https://link.springer.com/chapter/10.1007/978-94-007-6232-9_24 ''Advancing Methods for Biomolecular Crystallography'', pp. 277–295, Eds. R. Read, A. Urzhumtsev & V. Lunin, Springer, Dordrecht, January 2013]
*''Proteopedia: Exciting advances in the 3D encyclopedia of Biomolecular structure'', Jaime Prilusky, Eran Hodis and Joel L. Sussman [http://link.springer.com/chapter/10.1007/978-94-007-2530-0_14 ''Macromolecular Crystallography'' pp. 149-161,Eds. M.A. Carrondo & P. Spadon, Springer, Dordrecht, October, 2011]
 
*''Proteopedia: An online, collaborative 3D-encyclopedia of proteins & other molecules'', Jaime Prilusky. [http://cdn.rcsb.org/rcsb-pdb/general_information/news_publications/newsletters/2010q4/education_corner.html ''PDB Newsletter'' 48:6-7, Winter, 2011]
 
*''Proteopedia entry: "Tutorial: How we get the oxygen we breathe"'', Jaime Prilusky and Eran Hodis [http://pubmed.ncbi.nlm.nih.gov/22987558 ''Biochemistry and Molecular Biology Education'' 40:339, September-October, 2012] or [http://iubmb.onlinelibrary.wiley.com/doi/10.1002/bmb.20646 doi/10.1002/bmb.20646]


*''JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia'', Robert M. Hanson, Jaime Prilusky, Zhou Renjian, Takanori Nakane, Joel L. Sussman. [[https://onlinelibrary.wiley.com/doi/10.1002/ijch.201300024 ''Israel Journal of Chemistry'' 3-4:207-216, April, 2013]]
*''Publishing in Proteopedia: The Guide'', Jaime Prilusky, Wayne Decatur and Eric Martz. [http://link.springer.com/chapter/10.1007/978-94-007-6232-9_24 ''Advancing Methods for Biomolecular Crystallography'', pp. 277–295, Eds. R. Read, A. Urzhumtsev & V. Lunin, Springer, Dordrecht, January 2013]


*''Sharing macromolecule concepts online with Proteopedia'', Jaime Prilusky and Joel L. Sussman. [https://elifesciences.org/labs/a9c66d96/sharing-macromolecule-concepts-online-with-proteopedia ''eLife Labs''June 2016]
*''JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia'', Robert M. Hanson, Jaime Prilusky, Zhou Renjian, Takanori Nakane, Joel L. Sussman. [[http://onlinelibrary.wiley.com/doi/10.1002/ijch.201300024 ''Israel Journal of Chemistry'' 3-4:207-216, April, 2013]]
 
*''Sharing macromolecule concepts online with Proteopedia'', Jaime Prilusky and Joel L. Sussman. [http://elifesciences.org/labs/a9c66d96/sharing-macromolecule-concepts-online-with-proteopedia ''eLife Labs'' June 2016]


*''A practical guide to teaching with Proteopedia'', Claudia Castro, R. Jeremy Johnson, Bruno Kieffer, John A. Means, Ann Taylor, Jason Telford, Lynmarie K. Thompson, Joel L. Sussman, Jaime Prilusky and Karsten Theis.  [http://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.21548#:~:text=This%20guide%20provides%20practical%20advice,Proteopedia%2C%20and%20evaluating%20student%20work ''Biochemistry and Molecular Biology Education'' 43:707-719, May, 2021] or [http://iubmb.onlinelibrary.wiley.com/doi/10.1002/bmb.21548 doi:10.1002/bmb.21548].
*''A practical guide to teaching with Proteopedia'', Claudia Castro, R. Jeremy Johnson, Bruno Kieffer, John A. Means, Ann Taylor, Jason Telford, Lynmarie K. Thompson, Joel L. Sussman, Jaime Prilusky and Karsten Theis.  [http://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.21548#:~:text=This%20guide%20provides%20practical%20advice,Proteopedia%2C%20and%20evaluating%20student%20work ''Biochemistry and Molecular Biology Education'' 43:707-719, May, 2021] or [http://iubmb.onlinelibrary.wiley.com/doi/10.1002/bmb.21548 doi:10.1002/bmb.21548].
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**Advanced Molecular Biology (Biochem 642, for graduate students) taught by Drs. Robert Zimmermann and Alice Cheung. A two-session, hands-on workshop introducing [http://firstglance.jmol.org First Glance in Jmol] and Proteopedia's [[Scene authoring tools]] was taught by [[User:Wayne Decatur]], who prepared [[User:Wayne Decatur/Biochem642 Molecular Visualization Sessions|Biochem642 Molecular Visualization Sessions]] and [[User:Wayne_Decatur/Teaching_Proteopedia|Teaching Proteopedia]]. Students were assigned problem sets that required authoring accompanying scenes in sandbox pages. November, 2009.
**Advanced Molecular Biology (Biochem 642, for graduate students) taught by Drs. Robert Zimmermann and Alice Cheung. A two-session, hands-on workshop introducing [http://firstglance.jmol.org First Glance in Jmol] and Proteopedia's [[Scene authoring tools]] was taught by [[User:Wayne Decatur]], who prepared [[User:Wayne Decatur/Biochem642 Molecular Visualization Sessions|Biochem642 Molecular Visualization Sessions]] and [[User:Wayne_Decatur/Teaching_Proteopedia|Teaching Proteopedia]]. Students were assigned problem sets that required authoring accompanying scenes in sandbox pages. November, 2009.
**[http://people.chem.umass.edu/jhardy/BMS2008.html Biomolecular Structure (Chem 791a, for graduate students)] taught by crystallographer Jeanne Hardy. A computer lab workshop introducing the [[Scene authoring tools]] was taught by [[User:Wayne Decatur]], who prepared [[User:Wayne_Decatur/Chem791A_Work_Session|Chem791A Work Session]] and [[User:Wayne_Decatur/Teaching_Proteopedia|Teaching Proteopedia]]. November, 2008.
**[http://people.chem.umass.edu/jhardy/BMS2008.html Biomolecular Structure (Chem 791a, for graduate students)] taught by crystallographer Jeanne Hardy. A computer lab workshop introducing the [[Scene authoring tools]] was taught by [[User:Wayne Decatur]], who prepared [[User:Wayne_Decatur/Chem791A_Work_Session|Chem791A Work Session]] and [[User:Wayne_Decatur/Teaching_Proteopedia|Teaching Proteopedia]]. November, 2008.
**[[CBI_Molecules]] has involved a number students producing excellent pages for display on the [http://www.molecularplayground.org/ Molecular Playground]. [[User:Lynmarie K Thompson|Professor Lynmarie K. Thompson]] who has been involved with this has used Proteopedia for student projects in Chemistry 423 in [[Student Projects for UMass Chemistry 423 Spring 2011|2011]] and [[Student Projects for UMass Chemistry 423 Spring 2012|2012]].
**[[CBI_Molecules]] has involved a number of students producing excellent pages for display on the [http://www.molecularplayground.org/ Molecular Playground]. [[User:Lynmarie K Thompson|Professor Lynmarie K. Thompson]] who has been involved with this has used Proteopedia for student projects in Chemistry 423 in [[Student Projects for UMass Chemistry 423 Spring 2011|2011]] and [[Student Projects for UMass Chemistry 423 Spring 2012|2012]].
 
*'''Weizmann Institute of Science, Rehovot, ISRAEL''':
**Several Feinberg Graduate School (FGS) courses have provided instruction and resulted in the generation of dozens of Proteopedia pages suitable for high-school students, including the [http://erez.weizmann.ac.il/apx/r/ws1/186/30?pid=14951&pprev=14126 “Biology module: Bioinformatics - databases, tools, and current research”] by [http://www.weizmann.ac.il/Staff_Scientists/orna-dahan Dr. Orna Dahan] from the [http://longitude.weizmann.ac.il Pilpel lab], together with TAs from various labs.
**Courses in the Department of Science Teaching have used Proteopedia as a way to create pages that have been translated into dozens of languages, including [http://proteopedia.org/w/Quick_Manual_(Hebrew) Hebrew] & [http://proteopedia.org/w/Proteopedia:Languages#Non-English_Articles Arabic], by students and postdocs.


==Press==
==Press==
* [http://www.pdb.org/pdb/general_information/news_publications/newsletters/2010q4/education_corner.html PDB Education Corner], Winter 2011
* [http://f1000research.com/articles/9-278 Proteopedia in Faculty of 1000]. April, 2020
* [http://cdn.rcsb.org/rcsb-pdb/general_information/news_publications/newsletters/2010q4/education_corner.html PDB Education Corner], Winter 2011
* [https://www.embo.org/documents/news/encounters/EMBO_encounters_issue16.pdf EMBO Encounter - More than just pretty pictures], Autumn, 2010
* [http://www.genengnews.com/best-of-the-web/proteopedia/2496/ GENnews Best Of The Web: Proteopedia ], May, 2010
* [http://www.genengnews.com/best-of-the-web/proteopedia/2496/ GENnews Best Of The Web: Proteopedia ], May, 2010
* [http://www.the-scientist.com/article/display/57181/ The Scientist: "Structure Made Simple"]. March, 2010
* [http://www.the-scientist.com/article/display/57181/ The Scientist: "Structure Made Simple"]. March, 2010
* [http://seedmagazine.com/content/article/scientific_truth_in_the_age_of_wikipedia/ Seed Magazine: "Scientific Truth in the Age of Wikipedia"]. February, 2009
* [http://www.f1000biology.com/article/id/1121800 Proteopedia in Faculty of 1000]. October, 2008
* [http://www.nature.com/nrm/journal/v9/n10/full/nrm2512.html Nature Reviews Molecular Cell Biology] - October, 2008 Research highlights
* [http://www.nature.com/nrm/journal/v9/n10/full/nrm2512.html Nature Reviews Molecular Cell Biology] - October, 2008 Research highlights
* [http://www.nature.com/ncb/journal/v10/n10/pdf/ncb1008-1123.pdf Nature Cell Biology] - October, 2008, Proteopedia mentioned in Editorial
* [http://www.nature.com/ncb/journal/v10/n10/pdf/ncb1008-1123.pdf Nature Cell Biology] - October, 2008, Proteopedia mentioned in Editorial
* [http://genomebiology.com/pressreleases/pressrelease22August08.asp GenomeBiology.com Press Release] August, 2008


==Blogs==
==Blogs==
* [http://edfed.info/?p=4 edfed ] Proteopedia collects and disseminates information about molecules, February 8th, 2010
* [http://molecularmodelingbasics.blogspot.com/2009/10/proteopedia.html Molecular Modeling Basics] October, 2009. A blog related to the book of the same name.
* [http://molecularmodelingbasics.blogspot.com/2009/10/proteopedia.html Molecular Modeling Basics] October, 2009. A blog related to the book of the same name.
* [http://beckerinfo.net/bioinformatics/2008/12/03/open-source-visualization/ BeckerInfo.net Open Source Visualization] December, 2008
* http:// car54.wordpress.com August, 2008 (Web site not longer available)
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* [http://car54.wordpress.com/2008/08/22/proteopedia-3-d-encyclopedia-of-proteins-and-other-molecules/ car54.wordpress.com] August, 2008
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* [http://emmetcole.wordpress.com/2008/08/22/3d-protein-encyclopedia-aids-wikification-of-science-sort-of/#more-227 Wonder: Sci-Tech Department] August 2008
* [http://network.nature.com/blogs/user/rpg/2008/03/03/from-the-damn-but-thats-cool-department The Scientist -- Richard Grant's blog on Nature Network] March 2008
* [http://network.nature.com/blogs/user/rpg/2008/03/03/from-the-damn-but-thats-cool-department The Scientist -- Richard Grant's blog on Nature Network] March 2008
* [http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=990 Peter Murray Rust's blog] March, 2008
* [http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=990 Peter Murray Rust's blog] March, 2008


==Press Release Re-Posts==
==Press Release Re-Posts==
* [http://memagazine.asme.org/Articles/2008/November/Computing.cfm mechanical engineering] November, 2008
* [http://www.sciencedaily.com/releases/2008/08/080822120146.htm Science Daily] August, 2008
* [http://www.sciencedaily.com/releases/2008/08/080822120146.htm Science Daily] August, 2008
* [http://chronicle.com/wiredcampus/article/3277/proteopedia-an-online-encyclopedia-of-interactive-3-d-macromolecules The Wired Campus] August, 2008
* [https://www.chronicle.com/blogs/wiredcampus/proteopedia-an-online-encyclopedia-of-interactive-3-d-macromolecules The Wired Campus] August, 2008
* [http://esciencenews.com/articles/2008/08/22/life.isnt.2.d.so.why.should.our.encyclopedias.be e! Science News] August, 2008
* [http://esciencenews.com/articles/2008/08/22/life.isnt.2.d.so.why.should.our.encyclopedias.be e! Science News] August, 2008
* [http://google-sina.com/2008/08/23/life-isnt-2-d-so-why-should-our-encyclopedias-be/ Medical Health Articles] August, 2008
* [http://google-sina.com/2008/08/23/life-isnt-2-d-so-why-should-our-encyclopedias-be/ Medical Health Articles] August, 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Eric Martz, Eran Hodis, Jaime Prilusky, Ilan Samish, Wayne Decatur, Joel L. Sussman, Bonnie Hall
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