3dv9: Difference between revisions

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<StructureSection load='3dv9' size='340' side='right'caption='[[3dv9]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
<StructureSection load='3dv9' size='340' side='right'caption='[[3dv9]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3dv9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacv8 Bacv8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DV9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DV9 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3dv9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phocaeicola_vulgatus_ATCC_8482 Phocaeicola vulgatus ATCC 8482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DV9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DV9 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BVU_4110 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=435590 BACV8])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dv9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dv9 OCA], [https://pdbe.org/3dv9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dv9 RCSB], [https://www.ebi.ac.uk/pdbsum/3dv9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dv9 ProSAT], [https://www.topsan.org/Proteins/MCSG/3dv9 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dv9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dv9 OCA], [https://pdbe.org/3dv9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dv9 RCSB], [https://www.ebi.ac.uk/pdbsum/3dv9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dv9 ProSAT], [https://www.topsan.org/Proteins/MCSG/3dv9 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A6L7P8_PHOV8 A6L7P8_PHOV8]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dv9_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dv9_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacv8]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Clancy, S]]
[[Category: Phocaeicola vulgatus ATCC 8482]]
[[Category: Joachimiak, A]]
[[Category: Clancy S]]
[[Category: Structural genomic]]
[[Category: Joachimiak A]]
[[Category: Osipiuk, J]]
[[Category: Osipiuk J]]
[[Category: Tesar, C]]
[[Category: Tesar C]]
[[Category: Apc60149]]
[[Category: Beta-phosphoglucomutase]]
[[Category: Isomerase]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]

Latest revision as of 12:48, 6 November 2024

Putative beta-phosphoglucomutase from Bacteroides vulgatus.Putative beta-phosphoglucomutase from Bacteroides vulgatus.

Structural highlights

3dv9 is a 1 chain structure with sequence from Phocaeicola vulgatus ATCC 8482. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.72Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A6L7P8_PHOV8

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3dv9, resolution 1.72Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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