3dtd: Difference between revisions

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OCA

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-{{Seed}}
-[[Image:3dtd.png|left|200px]]
-<!--
+==Crystal structure of invasion associated protein b from bartonella henselae==
-The line below this paragraph, containing "STRUCTURE_3dtd", creates the "Structure Box" on the page.
+<StructureSection load='3dtd' size='340' side='right'caption='[[3dtd]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DTD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DTD FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-{{STRUCTURE_3dtd|  PDB=3dtd  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dtd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dtd OCA], [https://pdbe.org/3dtd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dtd RCSB], [https://www.ebi.ac.uk/pdbsum/3dtd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dtd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dtd TOPSAN]</span></td></tr>
+</table>
-===Crystal structure of invasion associated protein b from bartonella henselae===
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-DTD is a 12 chains structure of sequences from [http://en.wikipedia.org/wiki/Bartonella_henselae Bartonella henselae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DTD OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dt/3dtd_consurf.spt"</scriptWhenChecked>
-[[Category: Bartonella henselae]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Almo, S C.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Burley, S K.]]
+  </jmolCheckbox>
-[[Category: Freeman, J.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dtd ConSurf].
-[[Category: Groshong, C.]]
+<div style="clear:both"></div>
-[[Category: Koss, J.]]
+__TOC__
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+</StructureSection>
-[[Category: Ozyurt, S.]]
+[[Category: Large Structures]]
-[[Category: Patskovsky, Y.]]
+[[Category: Almo SC]]
-[[Category: Sauder, J M.]]
+[[Category: Burley SK]]
-[[Category: Slocombe, A.]]
+[[Category: Freeman J]]
-[[Category: Smith, D.]]
+[[Category: Groshong C]]
-[[Category: Wasserman, S.]]
+[[Category: Koss J]]
-[[Category: Invasion associated protein]]
+[[Category: Ozyurt S]]
-[[Category: New york sgx research center for structural genomic]]
+[[Category: Patskovsky Y]]
-[[Category: New york structural genomix research consortium]]
+[[Category: Sauder JM]]
-[[Category: Nysgxrc]]
+[[Category: Slocombe A]]
-[[Category: Protein structure initiative]]
+[[Category: Smith D]]
-[[Category: Psi-2]]
+[[Category: Wasserman S]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:33:09 2008''