3dqi: Difference between revisions

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OCA

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 ==Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures==
-<StructureSection load='3dqi' size='340' side='right' caption='[[3dqi]], [[Resolution|resolution]] 1.42&Aring;' scene=''>
+<StructureSection load='3dqi' size='340' side='right'caption='[[3dqi]], [[Resolution|resolution]] 1.42&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dqi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DQI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DQI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dqi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DQI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DQI FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.42&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1huy|1huy]], [[1yfp|1yfp]], [[2yfp|2yfp]], [[1f0b|1f0b]], [[1f09|1f09]], [[3dpw|3dpw]], [[3dpx|3dpx]], [[3dpz|3dpz]], [[3dq1|3dq1]], [[3dq2|3dq2]], [[3dq3|3dq3]], [[3dq4|3dq4]], [[3dq5|3dq5]], [[3dq6|3dq6]], [[3dq7|3dq7]], [[3dq8|3dq8]], [[3dq9|3dq9]], [[3dqa|3dqa]], [[3dqc|3dqc]], [[3dqd|3dqd]], [[3dqe|3dqe]], [[3dqf|3dqf]], [[3dqh|3dqh]], [[3dqj|3dqj]], [[3dqk|3dqk]], [[3dql|3dql]], [[3dqm|3dqm]], [[3dqn|3dqn]], [[3dqo|3dqo]], [[3dqu|3dqu]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dqi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dqi OCA], [https://pdbe.org/3dqi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dqi RCSB], [https://www.ebi.ac.uk/pdbsum/3dqi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dqi ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dqi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dqi OCA], [http://pdbe.org/3dqi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dqi RCSB], [http://www.ebi.ac.uk/pdbsum/3dqi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dqi ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
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    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dq/3dqi_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 32: / Line 31: @@
 ==See Also==
-*[[Green Fluorescent Protein|Green Fluorescent Protein]]
+*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Aeqvi]]
+[[Category: Aequorea victoria]]
-[[Category: Barstow, B]]
+[[Category: Large Structures]]
-[[Category: Kim, C U]]
+[[Category: Barstow B]]
-[[Category: Beta barrel]]
+[[Category: Kim CU]]
-[[Category: Chromophore]]
-[[Category: Fluorescent protein]]
-[[Category: High pressure]]
-[[Category: Luminescence]]
-[[Category: Luminescent protein]]
-[[Category: Photoprotein]]
-[[Category: Yellow fluorescent protein]]