3df7: Difference between revisions

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OCA

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-{{Seed}}
-[[Image:3df7.png|left|200px]]
-<!--
+==Crystal structure of a putative ATP-grasp superfamily protein from Archaeoglobus fulgidus==
-The line below this paragraph, containing "STRUCTURE_3df7", creates the "Structure Box" on the page.
+<StructureSection load='3df7' size='340' side='right'caption='[[3df7]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DF7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DF7 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3df7|  PDB=3df7  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3df7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3df7 OCA], [https://pdbe.org/3df7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3df7 RCSB], [https://www.ebi.ac.uk/pdbsum/3df7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3df7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3df7 TOPSAN]</span></td></tr>
+</table>
-===Crystal structure of a putative ATP-grasp superfamily protein from Archaeoglobus fulgidus===
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-DF7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DF7 OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/3df7_consurf.spt"</scriptWhenChecked>
-[[Category: Archaeoglobus fulgidus]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Single protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Burley, S K.]]
+  </jmolCheckbox>
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3df7 ConSurf].
-[[Category: Sugadev, R.]]
+<div style="clear:both"></div>
-[[Category: Swaminathan, S.]]
+__TOC__
-[[Category: 10040d]]
+</StructureSection>
-[[Category: Archaeoglobus fulgidus]]
+[[Category: Large Structures]]
-[[Category: Atp-grasp superfamily]]
+[[Category: Burley SK]]
-[[Category: New york sgx research center for structural genomic]]
+[[Category: Sugadev R]]
-[[Category: New york structural genomix research consortium]]
+[[Category: Swaminathan S]]
-[[Category: Nysgrc.]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-ii]]
-[[Category: Putative protein]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 03:42:24 2008''