3dby: Difference between revisions

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-[[Image:3dby.png|left|200px]]
-{{STRUCTURE_3dby|  PDB=3dby  |  SCENE=  }}
+==Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)==
+<StructureSection load='3dby' size='340' side='right'caption='[[3dby]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-===Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)===
+== Structural highlights ==
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DBY FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-[[3dby]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBY OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dby OCA], [https://pdbe.org/3dby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dby RCSB], [https://www.ebi.ac.uk/pdbsum/3dby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dby ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dby TOPSAN]</span></td></tr>
-[[Category: Bacillus cereus]]
+</table>
-[[Category: Almo, S C.]]
+== Evolutionary Conservation ==
-[[Category: Bonanno, J B.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Burley, S K.]]
+Check<jmol>
-[[Category: Freeman, J.]]
+  <jmolCheckbox>
-[[Category: Groshong, C.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3dby_consurf.spt"</scriptWhenChecked>
-[[Category: Hu, S.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Ozyurt, S.]]
+  </jmolCheckbox>
-[[Category: Ramagopal, U A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dby ConSurf].
-[[Category: Rodgers, L.]]
+<div style="clear:both"></div>
-[[Category: Wasserman, S.]]
+__TOC__
-[[Category: New york sgx research center for structural genomic]]
+</StructureSection>
-[[Category: Nysgxrc]]
+[[Category: Large Structures]]
-[[Category: Protein structure initiative]]
+[[Category: Almo SC]]
-[[Category: Psi-2]]
+[[Category: Bonanno JB]]
-[[Category: Structural genomic]]
+[[Category: Burley SK]]
-[[Category: Unknown function]]
+[[Category: Freeman J]]
+[[Category: Groshong C]]
+[[Category: Hu S]]
+[[Category: Ozyurt S]]
+[[Category: Ramagopal UA]]
+[[Category: Rodgers L]]
+[[Category: Wasserman S]]