3dec: Difference between revisions

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[[Image:3dec.png|left|200px]]


{{STRUCTURE_3dec|  PDB=3dec  |  SCENE=  }}
==Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron==
 
<StructureSection load='3dec' size='340' side='right'caption='[[3dec]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
===Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron===
== Structural highlights ==
 
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEC FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[3dec]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEC OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dec OCA], [https://pdbe.org/3dec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dec RCSB], [https://www.ebi.ac.uk/pdbsum/3dec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dec ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dec TOPSAN]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dec_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dec ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Galactosidase|Galactosidase]]
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
__TOC__
[[Category: Bonanno, J.]]
</StructureSection>
[[Category: Burley, S K.]]
[[Category: Large Structures]]
[[Category: Kumaran, D.]]
[[Category: Bonanno J]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Burley SK]]
[[Category: Romero, R.]]
[[Category: Kumaran D]]
[[Category: Swaminathan, S.]]
[[Category: Romero R]]
[[Category: Beta-galactosidase]]
[[Category: Swaminathan S]]
[[Category: Glucosyl hydrolase family 2]]
[[Category: Hydrolase]]
[[Category: Immunoglobulin-like fold]]
[[Category: Jelly-roll fold]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Nysgxrc]]
[[Category: Structural genomic]]
[[Category: Tim-barrel domain]]

Latest revision as of 12:47, 6 November 2024

Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicronCrystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.8Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3dec, resolution 2.80Å

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