3dec: Difference between revisions

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-[[Image:3dec.png|left|200px]]
-{{STRUCTURE_3dec|  PDB=3dec  |  SCENE=  }}
+==Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron==
+<StructureSection load='3dec' size='340' side='right'caption='[[3dec]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-===Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron===
+== Structural highlights ==
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEC FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[3dec]] is a 1 chain structure of [[Galactosidase]] with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEC OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dec OCA], [https://pdbe.org/3dec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dec RCSB], [https://www.ebi.ac.uk/pdbsum/3dec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dec ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dec TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dec_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dec ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Galactosidase|Galactosidase]]
+*[[Galactosidase 3D structures|Galactosidase 3D structures]]
-[[Category: Bacteria]]
+__TOC__
-[[Category: Bonanno, J.]]
+</StructureSection>
-[[Category: Burley, S K.]]
+[[Category: Large Structures]]
-[[Category: Kumaran, D.]]
+[[Category: Bonanno J]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Burley SK]]
-[[Category: Romero, R.]]
+[[Category: Kumaran D]]
-[[Category: Swaminathan, S.]]
+[[Category: Romero R]]
-[[Category: Beta-galactosidase]]
+[[Category: Swaminathan S]]
-[[Category: Glucosyl hydrolase family 2]]
-[[Category: Hydrolase]]
-[[Category: Immunoglobulin-like fold]]
-[[Category: Jelly-roll fold]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Structural genomic]]
-[[Category: Tim-barrel domain]]