3d8u: Difference between revisions

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-[[Image:3d8u.png|left|200px]]
-{{STRUCTURE_3d8u|  PDB=3d8u  |  SCENE=  }}
+==The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633==
+<StructureSection load='3d8u' size='340' side='right'caption='[[3d8u]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
-===The crystal structure of a PurR family transcriptional regulator from Vibrio parahaemolyticus RIMD 2210633===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3d8u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D8U FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[3d8u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8U OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8u OCA], [https://pdbe.org/3d8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d8u RCSB], [https://www.ebi.ac.uk/pdbsum/3d8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d8u ProSAT], [https://www.topsan.org/Proteins/MCSG/3d8u TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8u_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d8u ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Vibrio parahaemolyticus]]
-[[Category: Hatzos, C.]]
+[[Category: Hatzos C]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Moy S]]
-[[Category: Moy, S.]]
+[[Category: Tan K]]
-[[Category: Tan, K.]]
-[[Category: Apc91343 1]]
-[[Category: Dna-binding]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Purr]]
-[[Category: Structural genomic]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]
-[[Category: Transcription regulator]]
-[[Category: Transcriptional regulator]]
-[[Category: Vibrio parahaemolyticus rimd 2210633]]