3d76: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Crystal structure of a pheromone binding protein mutant D35N, from Apis mellifera, soaked at pH 7.0==
-<StructureSection load='3d76' size='340' side='right' caption='[[3d76]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='3d76' size='340' side='right'caption='[[3d76]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3d76]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D76 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D76 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3d76]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D76 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D76 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NBB:N-BUTYL-BENZENESULFONAMIDE'>NBB</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2h8v|2h8v]], [[3cdn|3cdn]], [[3bjh|3bjh]], [[3cab|3cab]], [[3bfa|3bfa]], [[3bfb|3bfb]], [[3bfh|3bfh]], [[3cyz|3cyz]], [[3cz0|3cz0]], [[3cz1|3cz1]], [[3cz2|3cz2]], [[3d73|3d73]], [[3d74|3d74]], [[3d75|3d75]], [[3d77|3d77]], [[3d78|3d78]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NBB:N-BUTYL-BENZENESULFONAMIDE'>NBB</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d76 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3d76 RCSB], [http://www.ebi.ac.uk/pdbsum/3d76 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d76 OCA], [https://pdbe.org/3d76 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d76 RCSB], [https://www.ebi.ac.uk/pdbsum/3d76 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d76 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9U9J6_APIME Q9U9J6_APIME]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/3d76_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/3d76_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d76 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3d76" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Pheromone binding protein|Pheromone binding protein]]
 == References ==
 <references/>
@@ Line 30: / Line 37: @@
 </StructureSection>
 [[Category: Apis mellifera]]
-[[Category: Bezirard, V]]
+[[Category: Large Structures]]
-[[Category: Briand, L]]
+[[Category: Bezirard V]]
-[[Category: Cambillau, C]]
+[[Category: Briand L]]
-[[Category: Pernollet, J C]]
+[[Category: Cambillau C]]
-[[Category: Pesenti, M E]]
+[[Category: Pernollet JC]]
-[[Category: Spinelli, S]]
+[[Category: Pesenti ME]]
-[[Category: Tegoni, M]]
+[[Category: Spinelli S]]
-[[Category: Honey bee]]
+[[Category: Tegoni M]]
-[[Category: Ph]]
-[[Category: Pheromone binding protein]]
-[[Category: Queen mandibular protein]]
-[[Category: Signal transduction]]