3d6w: Difference between revisions

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==LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.==
==LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.==
<StructureSection load='3d6w' size='340' side='right' caption='[[3d6w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='3d6w' size='340' side='right'caption='[[3d6w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3d6w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacc1 Bacc1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D6W FirstGlance]. <br>
<table><tr><td colspan='2'>[[3d6w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_10987 Bacillus cereus ATCC 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D6W FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BCE_1947 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=222523 BACC1])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d6w OCA], [https://pdbe.org/3d6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d6w RCSB], [https://www.ebi.ac.uk/pdbsum/3d6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d6w ProSAT], [https://www.topsan.org/Proteins/MCSG/3d6w TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d6w OCA], [http://pdbe.org/3d6w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d6w RCSB], [http://www.ebi.ac.uk/pdbsum/3d6w PDBsum], [http://www.topsan.org/Proteins/MCSG/3d6w TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q73A38_BACC1 Q73A38_BACC1]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d6/3d6w_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d6/3d6w_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacc1]]
[[Category: Bacillus cereus ATCC 10987]]
[[Category: Edwards, A M]]
[[Category: Large Structures]]
[[Category: Evdokimova, E]]
[[Category: Edwards AM]]
[[Category: Joachimiak, A]]
[[Category: Evdokimova E]]
[[Category: Kudritska, M]]
[[Category: Joachimiak A]]
[[Category: Structural genomic]]
[[Category: Kudritska M]]
[[Category: Osipiuk, J]]
[[Category: Osipiuk J]]
[[Category: Savchenko, A]]
[[Category: Savchenko A]]
[[Category: Apc7590]]
[[Category: Dna binding protein]]
[[Category: Lyttr dna-binding domain]]
[[Category: Mcsg]]
[[Category: Methyl-accepting/dna response regulator]]
[[Category: PSI, Protein structure initiative]]

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