3d0k: Difference between revisions

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[[Image:3d0k.png|left|200px]]


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==Crystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussis==
The line below this paragraph, containing "STRUCTURE_3d0k", creates the "Structure Box" on the page.
<StructureSection load='3d0k' size='340' side='right'caption='[[3d0k]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d0k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D0K FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3d0k|  PDB=3d0k  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d0k OCA], [https://pdbe.org/3d0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d0k RCSB], [https://www.ebi.ac.uk/pdbsum/3d0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d0k ProSAT], [https://www.topsan.org/Proteins/MCSG/3d0k TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussis===
== Function ==
 
[https://www.uniprot.org/uniprot/Q7W3B7_BORPA Q7W3B7_BORPA]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3D0K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D0K OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d0/3d0k_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d0k ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bordetella parapertussis 12822]]
[[Category: Bordetella parapertussis 12822]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Jedrzejczak, R.]]
[[Category: Jedrzejczak R]]
[[Category: Joachimiak, A.]]
[[Category: Joachimiak A]]
[[Category: Kim, Y.]]
[[Category: Kim Y]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Tesar C]]
[[Category: Tesar, C.]]
[[Category: Alpha-beta-alpha sandwich]]
[[Category: Hydrolase]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:59:29 2008''

Latest revision as of 11:56, 30 October 2024

Crystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussisCrystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussis

Structural highlights

3d0k is a 2 chain structure with sequence from Bordetella parapertussis 12822. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.83Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q7W3B7_BORPA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3d0k, resolution 1.83Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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