2vlw: Difference between revisions

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-{{Seed}}
-[[Image:2vlw.png|left|200px]]
-<!--
+==Crystal structure of the muscarinic toxin MT7 diiodoTYR51 derivative.==
-The line below this paragraph, containing "STRUCTURE_2vlw", creates the "Structure Box" on the page.
+<StructureSection load='2vlw' size='340' side='right'caption='[[2vlw]], [[Resolution|resolution]] 1.39&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2vlw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dendroaspis_angusticeps Dendroaspis angusticeps]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VLW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VLW FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.39&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYI:3,5-DIIODOTYROSINE'>TYI</scene></td></tr>
-{{STRUCTURE_2vlw|  PDB=2vlw  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vlw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vlw OCA], [https://pdbe.org/2vlw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vlw RCSB], [https://www.ebi.ac.uk/pdbsum/2vlw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vlw ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/3SIM7_DENAN 3SIM7_DENAN] Binds irreversibly and specifically to an allosteric site of the muscarinic acetylcholine M1 receptor (CHRM1).<ref>PMID:10799315</ref> <ref>PMID:11562434</ref> <ref>PMID:12488533</ref> <ref>PMID:21557730</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/2vlw_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vlw ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Muscarinic MT7 toxin is a highly selective and potent antagonist of the M(1) subtype of muscarinic receptor and acts by binding to an allosteric site. To identify the molecular determinants by which MT7 toxin interacts with this receptor in its free and NMS-occupied states, the effect on toxin potency of alanine substitution was evaluated in equilibrium and kinetic binding experiments as well as in functional assays. The determination of the crystallographic structure of an MT7-derivative (MT7-diiodoTyr51) allowed the selection of candidate residues that are accessible and present on both faces of the three toxin loops. The equilibrium binding data are consistent with negative cooperativity between N-methylscopolamine (NMS) and wild-type or modified MT7 and highlight the critical role of the tip of the central loop of the toxin (Arg34, Met35 Tyr36) in its interaction with the unoccupied receptor. Examination of the potency of wild-type and modified toxins to allosterically decrease the dissociation rate of [(3)H]NMS allowed the identification of the MT7 residues involved in its interaction with the NMS-occupied receptor. In contrast to the results with the unoccupied receptor, the most important residue for this interaction was Tyr36 in loop II, assisted by Trp10 in loop I and Arg52 in loop III. The critical role of the tips of the MT7 loops was also confirmed in functional experiments. The high specificity of the MT7-M(1) receptor interaction exploits several MT7-specific residues and reveals a different mode of interaction of the toxin with the free and NMS-occupied states of the receptor.
-===CRYSTAL STRUCTURE OF THE MUSCARINIC TOXIN MT7 DIIODOTYR51 DERIVATIVE.===
+Different interactions between MT7 toxin and the human muscarinic M1 receptor in its free and N-methylscopolamine-occupied states.,Fruchart-Gaillard C, Mourier G, Marquer C, Stura E, Birdsall NJ, Servent D Mol Pharmacol. 2008 Dec;74(6):1554-63. Epub 2008 Sep 10. PMID:18784346<ref>PMID:18784346</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-==About this Structure==
+</div>
-VLW is a [[Single protein]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VLW OCA].
+<div class="pdbe-citations 2vlw" style="background-color:#fffaf0;"></div>
-[[Category: Single protein]]
+== References ==
-[[Category: Fruchart-Gaillard, C.]]
+<references/>
-[[Category: Granata, V.]]
+__TOC__
-[[Category: Menez, A.]]
+</StructureSection>
-[[Category: Menez, R.]]
+[[Category: Dendroaspis angusticeps]]
-[[Category: Mourier, G.]]
+[[Category: Large Structures]]
-[[Category: Servant, D.]]
+[[Category: Fruchart-Gaillard C]]
-[[Category: Stura, E A.]]
+[[Category: Granata V]]
-[[Category: Acetylcholine receptor inhibitor]]
+[[Category: Menez A]]
-[[Category: Diiodotyrosine]]
+[[Category: Menez R]]
-[[Category: Green mamba snake toxin]]
+[[Category: Mourier G]]
-[[Category: Hm1 muscarinic receptor]]
+[[Category: Servant D]]
-[[Category: Muscarinic toxin]]
+[[Category: Stura EA]]
-[[Category: Neurotoxin]]
-[[Category: Postsynaptic neurotoxin]]
-[[Category: Secreted]]
-[[Category: Toxin]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 26 20:06:21 2008''