3d2l: Difference between revisions

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-[[Image:3d2l.png|left|200px]]
-{{STRUCTURE_3d2l|  PDB=3d2l  |  SCENE=  }}
+==Crystal structure of SAM-dependent methyltransferase (ZP_00538691.1) from EXIGUOBACTERIUM SP. 255-15 at 1.90 A resolution==
+<StructureSection load='3d2l' size='340' side='right'caption='[[3d2l]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-===Crystal structure of SAM-dependent methyltransferase (ZP_00538691.1) from EXIGUOBACTERIUM SP. 255-15 at 1.90 A resolution===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3d2l]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Exiguobacterium_sibiricum_255-15 Exiguobacterium sibiricum 255-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D2L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D2L FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[3d2l]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Exiguobacterium_sibiricum_255-15 Exiguobacterium sibiricum 255-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D2L OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d2l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d2l OCA], [https://pdbe.org/3d2l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d2l RCSB], [https://www.ebi.ac.uk/pdbsum/3d2l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d2l ProSAT], [https://www.topsan.org/Proteins/JCSG/3d2l TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/B1YKR8_EXIS2 B1YKR8_EXIS2]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d2/3d2l_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d2l ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[SAM-dependent methyltransferase|SAM-dependent methyltransferase]]
+*[[SAM-dependent methyltrasferase 3D structures|SAM-dependent methyltrasferase 3D structures]]
+__TOC__
+</StructureSection>
 [[Category: Exiguobacterium sibiricum 255-15]]
-[[Category: JCSG, Joint Center for Structural Genomics.]]
+[[Category: Large Structures]]
-[[Category: Jcsg]]
-[[Category: Joint center for structural genomic]]
-[[Category: Methyltransferase domain]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Sam-dependent methyltransferase]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]
-[[Category: Zp_00538691 1]]