3c6l: Difference between revisions

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-{{Seed}}
-[[Image:3c6l.png|left|200px]]
-<!--
+==Crystal structure of mouse MHC class II I-Ab/3K peptide complexed with mouse TCR 2W20==
-The line below this paragraph, containing "STRUCTURE_3c6l", creates the "Structure Box" on the page.
+<StructureSection load='3c6l' size='340' side='right'caption='[[3c6l]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3c6l]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C6L FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-{{STRUCTURE_3c6l|  PDB=3c6l  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c6l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c6l OCA], [https://pdbe.org/3c6l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c6l RCSB], [https://www.ebi.ac.uk/pdbsum/3c6l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c6l ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/HA2B_MOUSE HA2B_MOUSE]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c6/3c6l_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c6l ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+To test whether highly crossreactive alphabeta T cell receptors (TCRs) produced during limited negative selection best illustrate evolutionarily conserved interactions between TCR and major histocompatibility complex (MHC) molecules, we solved the structures of three TCRs bound to the same MHC II peptide (IAb-3K). The TCRs had similar affinities for IAb-3K but varied from noncrossreactive to extremely crossreactive with other peptides and MHCs. Crossreactivity correlated with a shrinking, increasingly hydrophobic TCR-ligand interface, involving fewer TCR amino acids. A few CDR1 and CDR2 amino acids dominated the most crossreactive TCR interface with MHC, including Vbeta8 48Y and 54E and Valpha4 29Y, arranged to impose the familiar diagonal orientation of TCR on MHC. These interactions contribute to MHC binding by other TCRs using related V regions, but not usually so dominantly. These data show that crossreactive TCRs can spotlight the evolutionarily conserved features of TCR-MHC interactions and that these interactions impose the diagonal docking of TCRs on MHC.
-===Crystal structure of mouse MHC class II I-Ab/3K peptide complexed with mouse TCR 2W20===
+Crossreactive T Cells spotlight the germline rules for alphabeta T cell-receptor interactions with MHC molecules.,Dai S, Huseby ES, Rubtsova K, Scott-Browne J, Crawford F, Macdonald WA, Marrack P, Kappler JW Immunity. 2008 Mar;28(3):324-34. Epub 2008 Feb 28. PMID:18308592<ref>PMID:18308592</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3c6l" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_18308592}}, adds the Publication Abstract to the page
+*[[MHC 3D structures|MHC 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 18308592 is the PubMed ID number.
+*[[MHC II 3D structures|MHC II 3D structures]]
--->
+== References ==
-{{ABSTRACT_PUBMED_18308592}}
+<references/>
+__TOC__
-==About this Structure==
+</StructureSection>
-C6L is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6L OCA].
+[[Category: Large Structures]]
-==Reference==
-Crossreactive T Cells spotlight the germline rules for alphabeta T cell-receptor interactions with MHC molecules., Dai S, Huseby ES, Rubtsova K, Scott-Browne J, Crawford F, Macdonald WA, Marrack P, Kappler JW, Immunity. 2008 Mar;28(3):324-34. Epub 2008 Feb 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18308592 18308592]
 [[Category: Mus musculus]]
-[[Category: Protein complex]]
+[[Category: Dai S]]
-[[Category: Dai, S.]]
-[[Category: Glycoprotein]]
-[[Category: Immune response]]
-[[Category: Membrane]]
-[[Category: Mhc ii]]
-[[Category: Sugar binding protein/immune system complex]]
-[[Category: Tcr-pmhc complex]]
-[[Category: Transmembrane]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 15:39:45 2008''