2plr: Difference between revisions

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-[[Image:2plr.png|left|200px]]
-{{STRUCTURE_2plr|  PDB=2plr  |  SCENE=  }}
+==Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7==
+<StructureSection load='2plr' size='340' side='right'caption='[[2plr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2plr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PLR FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2plr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2plr OCA], [https://pdbe.org/2plr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2plr RCSB], [https://www.ebi.ac.uk/pdbsum/2plr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2plr ProSAT], [https://www.topsan.org/Proteins/RSGI/2plr TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/KTHY2_SULTO KTHY2_SULTO]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pl/2plr_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2plr ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7===
+==See Also==
+*[[Thymidylate kinase 3D structures|Thymidylate kinase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-[[2plr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLR OCA].
+[[Category: Large Structures]]
-[[Category: Sulfolobus tokodaii]]
+[[Category: Sulfurisphaera tokodaii str. 7]]
-[[Category: DTMP kinase]]
+[[Category: Ebihara A]]
-[[Category: Ebihara, A.]]
+[[Category: Jeyakanthan J]]
-[[Category: Jeyakanthan, J.]]
+[[Category: Kanaujia SP]]
-[[Category: Kanaujia, S P.]]
+[[Category: Kuramitsu S]]
-[[Category: Kuramitsu, S.]]
+[[Category: Nakagawa N]]
-[[Category: Nakagawa, N.]]
+[[Category: Rafi ZA]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Sekar K]]
-[[Category: Rafi, Z A.]]
+[[Category: Shinkai A]]
-[[Category: Sekar, K.]]
+[[Category: Shiro Y]]
-[[Category: Shinkai, A.]]
+[[Category: Yokoyama S]]
-[[Category: Shiro, Y.]]
-[[Category: Yokoyama, S.]]
-[[Category: Atp-binding]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-[[Category: Thymidylate kinase]]
-[[Category: Tmp-binding]]
-[[Category: Transferase]]