3clm: Difference between revisions

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New page: left|200px {{Structure |PDB= 3clm |SIZE=350|CAPTION= <scene name='initialview01'>3clm</scene>, resolution 1.140Å |SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+...
 
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[[Image:3clm.jpg|left|200px]]


{{Structure
==Crystal structure of transaldolase (YP_208650.1) from Neisseria gonorrhoeae FA 1090 at 1.14 A resolution==
|PDB= 3clm |SIZE=350|CAPTION= <scene name='initialview01'>3clm</scene>, resolution 1.140&Aring;
<StructureSection load='3clm' size='340' side='right'caption='[[3clm]], [[Resolution|resolution]] 1.14&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+A+352'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+A+353'>AC2</scene>, <scene name='pdbsite=AC3:Edo+Binding+Site+For+Residue+A+354'>AC3</scene>, <scene name='pdbsite=AC4:Edo+Binding+Site+For+Residue+A+355'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+A+356'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+A+357'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+358'>AC7</scene>, <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+359'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+A+360'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+A+361'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+A+362'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+A+363'>BC3</scene> and <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+A+364'>BC4</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[3clm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_FA_1090 Neisseria gonorrhoeae FA 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CLM FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Transaldolase Transaldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.2.1.2 2.2.1.2] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.14&#8491;</td></tr>
|GENE= YP_208650.1, tal, NGO1610 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242231 Neisseria gonorrhoeae FA 1090])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00955 Transaldolase_like]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3clm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3clm OCA], [https://pdbe.org/3clm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3clm RCSB], [https://www.ebi.ac.uk/pdbsum/3clm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3clm ProSAT], [https://www.topsan.org/Proteins/JCSG/3clm TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3clm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3clm OCA], [http://www.ebi.ac.uk/pdbsum/3clm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3clm RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/TAL_NEIG1 TAL_NEIG1] Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cl/3clm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3clm ConSurf].
<div style="clear:both"></div>


'''Crystal structure of transaldolase (YP_208650.1) from Neisseria gonorrhoeae FA 1090 at 1.14 A resolution'''
==See Also==
 
*[[Transaldolase 3D structures|Transaldolase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
3CLM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_fa_1090 Neisseria gonorrhoeae fa 1090]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLM OCA].
[[Category: Large Structures]]
[[Category: Neisseria gonorrhoeae fa 1090]]
[[Category: Neisseria gonorrhoeae FA 1090]]
[[Category: Single protein]]
[[Category: Transaldolase]]
[[Category: JCSG, Joint Center for Structural Genomics.]]
[[Category: cytoplasm]]
[[Category: jcsg]]
[[Category: joint center for structural genomic]]
[[Category: lyase]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
[[Category: transaldolase]]
[[Category: transferase]]
[[Category: yp_208650 1]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr  2 12:00:25 2008''

Latest revision as of 11:54, 30 October 2024

Crystal structure of transaldolase (YP_208650.1) from Neisseria gonorrhoeae FA 1090 at 1.14 A resolutionCrystal structure of transaldolase (YP_208650.1) from Neisseria gonorrhoeae FA 1090 at 1.14 A resolution

Structural highlights

3clm is a 1 chain structure with sequence from Neisseria gonorrhoeae FA 1090. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.14Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

TAL_NEIG1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3clm, resolution 1.14Å

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