3clk: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:3clk.jpg|left|200px]]
-<!--
+==Crystal structure of a transcription regulator from Lactobacillus plantarum==
-The line below this paragraph, containing "STRUCTURE_3clk", creates the "Structure Box" on the page.
+<StructureSection load='3clk' size='340' side='right'caption='[[3clk]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3clk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum_WCFS1 Lactiplantibacillus plantarum WCFS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CLK FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3clk|  PDB=3clk  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3clk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3clk OCA], [https://pdbe.org/3clk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3clk RCSB], [https://www.ebi.ac.uk/pdbsum/3clk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3clk ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3clk TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of a transcription regulator from Lactobacillus plantarum'''
+== Function ==
+[https://www.uniprot.org/uniprot/F9ULH5_LACPL F9ULH5_LACPL]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-CLK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum_wcfs1 Lactobacillus plantarum wcfs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CLK OCA].
+Check<jmol>
-[[Category: Lactobacillus plantarum wcfs1]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cl/3clk_consurf.spt"</scriptWhenChecked>
-[[Category: Burley, S K.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Sugadev, R.]]
+  </jmolCheckbox>
-[[Category: Swaminathan, S.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3clk ConSurf].
-[[Category: 11017j]]
+<div style="clear:both"></div>
-[[Category: Dimer]]
+__TOC__
-[[Category: Dna-binding]]
+</StructureSection>
-[[Category: New york structural genomix research consortium]]
+[[Category: Lactiplantibacillus plantarum WCFS1]]
-[[Category: Nysgxrc]]
+[[Category: Large Structures]]
-[[Category: Protein structure initiative]]
+[[Category: Burley SK]]
-[[Category: Psi-ii]]
+[[Category: Sugadev R]]
-[[Category: Structural genomic]]
+[[Category: Swaminathan S]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]
-[[Category: Transcription regulator]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 21:52:50 2008''