2vml: Difference between revisions

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New page: left|200px {{Structure |PDB= 2vml |SIZE=350|CAPTION= <scene name='initialview01'>2vml</scene>, resolution 2.400Å |SITE= <scene name='pdbsite=AC1:Cyc+Binding+Site...
 
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[[Image:2vml.jpg|left|200px]]


{{Structure
==The monoclinic structure of phycocyanin from Gloeobacter violaceus==
|PDB= 2vml |SIZE=350|CAPTION= <scene name='initialview01'>2vml</scene>, resolution 2.400&Aring;
<StructureSection load='2vml' size='340' side='right'caption='[[2vml]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:Cyc+Binding+Site+For+Residue+A+1082'>AC1</scene>, <scene name='pdbsite=AC2:Cyc+Binding+Site+For+Residue+B+1082'>AC2</scene>, <scene name='pdbsite=AC3:Cyc+Binding+Site+For+Residue+B+1153'>AC3</scene>, <scene name='pdbsite=AC4:Cyc+Binding+Site+For+Residue+C+1082'>AC4</scene>, <scene name='pdbsite=AC5:Cyc+Binding+Site+For+Residue+D+1082'>AC5</scene>, <scene name='pdbsite=AC6:Cyc+Binding+Site+For+Residue+D+1153'>AC6</scene>, <scene name='pdbsite=AC7:Cyc+Binding+Site+For+Residue+E+1082'>AC7</scene>, <scene name='pdbsite=AC8:Cyc+Binding+Site+For+Residue+F+1082'>AC8</scene>, <scene name='pdbsite=AC9:Cyc+Binding+Site+For+Residue+F+1153'>AC9</scene>, <scene name='pdbsite=BC1:Cyc+Binding+Site+For+Residue+G+1082'>BC1</scene>, <scene name='pdbsite=BC2:Cyc+Binding+Site+For+Residue+H+1082'>BC2</scene>, <scene name='pdbsite=BC3:Cyc+Binding+Site+For+Residue+H+1153'>BC3</scene>, <scene name='pdbsite=BC4:Cyc+Binding+Site+For+Residue+I+1082'>BC4</scene>, <scene name='pdbsite=BC5:Cyc+Binding+Site+For+Residue+J+1082'>BC5</scene>, <scene name='pdbsite=BC6:Cyc+Binding+Site+For+Residue+J+1153'>BC6</scene>, <scene name='pdbsite=BC7:Cyc+Binding+Site+For+Residue+K+1082'>BC7</scene>, <scene name='pdbsite=BC8:Cyc+Binding+Site+For+Residue+L+1082'>BC8</scene> and <scene name='pdbsite=BC9:Cyc+Binding+Site+For+Residue+L+1153'>BC9</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene>
<table><tr><td colspan='2'>[[2vml]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloeobacter_violaceus Gloeobacter violaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VML FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00502 Phycobilisome]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vml OCA], [https://pdbe.org/2vml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vml RCSB], [https://www.ebi.ac.uk/pdbsum/2vml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vml ProSAT]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vml OCA], [http://www.ebi.ac.uk/pdbsum/2vml PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2vml RCSB]</span>
</table>
}}
== Function ==
[https://www.uniprot.org/uniprot/Q7M7F7_GLOVI Q7M7F7_GLOVI]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/2vml_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vml ConSurf].
<div style="clear:both"></div>


'''THE MONOCLINIC STRUCTURE OF PHYCOCYANIN FROM GLOEOBACTER VIOLACEUS'''
==See Also==
 
*[[Phycocyanin|Phycocyanin]]
 
__TOC__
==About this Structure==
</StructureSection>
2VML is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Gloeobacter_violaceus Gloeobacter violaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VML OCA].
[[Category: Gloeobacter violaceus]]
[[Category: Gloeobacter violaceus]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Barber, J.]]
[[Category: Barber J]]
[[Category: Benson, S.]]
[[Category: Benson S]]
[[Category: Murray, J W.]]
[[Category: Murray JW]]
[[Category: bile pigment]]
[[Category: chromophore]]
[[Category: electron transport]]
[[Category: light-harvesting]]
[[Category: photosynthesis]]
[[Category: phycobilisome]]
[[Category: transport]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 09:54:54 2008''

Latest revision as of 12:32, 6 November 2024

The monoclinic structure of phycocyanin from Gloeobacter violaceusThe monoclinic structure of phycocyanin from Gloeobacter violaceus

Structural highlights

2vml is a 12 chain structure with sequence from Gloeobacter violaceus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q7M7F7_GLOVI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2vml, resolution 2.40Å

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OCA
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