3ccy: Difference between revisions

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[[Image:3ccy.png|left|200px]]


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==Crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822==
The line below this paragraph, containing "STRUCTURE_3ccy", creates the "Structure Box" on the page.
<StructureSection load='3ccy' size='340' side='right'caption='[[3ccy]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ccy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CCY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3ccy|  PDB=3ccy  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ccy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ccy OCA], [https://pdbe.org/3ccy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ccy RCSB], [https://www.ebi.ac.uk/pdbsum/3ccy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ccy ProSAT], [https://www.topsan.org/Proteins/MCSG/3ccy TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822===
== Function ==
 
[https://www.uniprot.org/uniprot/Q7W6R8_BORPA Q7W6R8_BORPA]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3CCY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CCY OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/3ccy_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ccy ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bordetella parapertussis 12822]]
[[Category: Bordetella parapertussis 12822]]
[[Category: Clancy, S.]]
[[Category: Large Structures]]
[[Category: Joachimiak, A.]]
[[Category: Clancy S]]
[[Category: Li, H.]]
[[Category: Joachimiak A]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Li H]]
[[Category: Tan, K.]]
[[Category: Tan K]]
[[Category: Apc88698]]
[[Category: Bordetella parapertussis 12822]]
[[Category: Dna-binding]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Tetr]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:03:47 2008''

Latest revision as of 12:44, 6 November 2024

Crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822Crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822

Structural highlights

3ccy is a 1 chain structure with sequence from Bordetella parapertussis 12822. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.01Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q7W6R8_BORPA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3ccy, resolution 2.01Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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