3c6v: Difference between revisions

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-[[Image:3c6v.jpg|left|200px]]
- {{Structure
+==Crystal structure of AU4130/APC7354, a probable enzyme from the thermophilic fungus Aspergillus fumigatus==
-|PDB= 3c6v |SIZE=350|CAPTION= <scene name='initialview01'>3c6v</scene>, resolution 1.90&Aring;
+<StructureSection load='3c6v' size='340' side='right'caption='[[3c6v]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+B+141'>AC1</scene> and <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+B+142'>AC2</scene>
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+<table><tr><td colspan='2'>[[3c6v]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus_Af293 Aspergillus fumigatus Af293]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C6V FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-|GENE= AU04310, AFUA_3G03220 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=330879 Aspergillus fumigatus Af293])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c6v OCA], [https://pdbe.org/3c6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c6v RCSB], [https://www.ebi.ac.uk/pdbsum/3c6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c6v ProSAT], [https://www.topsan.org/Proteins/MCSG/3c6v TOPSAN]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c6v OCA], [http://www.ebi.ac.uk/pdbsum/3c6v PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3c6v RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/Q4WF74_ASPFU Q4WF74_ASPFU]
+== Evolutionary Conservation ==
-'''Crystal structure of AU4130/APC7354, a probable enzyme from the thermophilic fungus Aspergillus fumigatus'''
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
-==About this Structure==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c6/3c6v_consurf.spt"</scriptWhenChecked>
-C6V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_fumigatus_af293 Aspergillus fumigatus af293]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6V OCA].
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Aspergillus fumigatus af293]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Single protein]]
+  </jmolCheckbox>
-[[Category: Binkowski, T A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c6v ConSurf].
-[[Category: Edwards, A M.]]
+<div style="clear:both"></div>
-[[Category: Joachimiak, A.]]
+__TOC__
-[[Category: Kagan, O.]]
+</StructureSection>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Aspergillus fumigatus Af293]]
-[[Category: Savchenko, A.]]
+[[Category: Large Structures]]
-[[Category: Singer, A U.]]
+[[Category: Binkowski TA]]
-[[Category: Skarina, T.]]
+[[Category: Edwards AM]]
-[[Category: aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase]]
+[[Category: Joachimiak A]]
-[[Category: mcsg]]
+[[Category: Kagan O]]
-[[Category: midwest center for structural genomic]]
+[[Category: Savchenko A]]
-[[Category: protein structure initiative]]
+[[Category: Singer AU]]
-[[Category: psi-2]]
+[[Category: Skarina T]]
-[[Category: structural genomic]]
-[[Category: unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:30:59 2008''