3bv8: Difference between revisions

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-[[Image:3bv8.jpg|left|200px]]
- {{Structure
+==Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus==
-|PDB= 3bv8 |SIZE=350|CAPTION= <scene name='initialview01'>3bv8</scene>, resolution 1.750&Aring;
+<StructureSection load='3bv8' size='340' side='right'caption='[[3bv8]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+A+101'>AC1</scene> and <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+102'>AC2</scene>
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+<table><tr><td colspan='2'>[[3bv8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_Mu50 Staphylococcus aureus subsp. aureus Mu50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BV8 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-|GENE= dapD, SAV1397 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=158878 Staphylococcus aureus subsp. aureus Mu50])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bv8 OCA], [https://pdbe.org/3bv8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bv8 RCSB], [https://www.ebi.ac.uk/pdbsum/3bv8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bv8 ProSAT], [https://www.topsan.org/Proteins/MCSG/3bv8 TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus'''
+== Function ==
+[https://www.uniprot.org/uniprot/DAPH_STAAM DAPH_STAAM] Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.[HAMAP-Rule:MF_01691]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-BV8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_mu50 Staphylococcus aureus subsp. aureus mu50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA].
+Check<jmol>
-[[Category: Single protein]]
+  <jmolCheckbox>
-[[Category: Staphylococcus aureus subsp. aureus mu50]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bv8_consurf.spt"</scriptWhenChecked>
-[[Category: Clancy, S.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Cuff, M E.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Duggan, E.]]
+  </jmolCheckbox>
-[[Category: Joachimiak, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bv8 ConSurf].
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+<div style="clear:both"></div>
-[[Category: GOL]]
+__TOC__
-[[Category: NA]]
+</StructureSection>
-[[Category: acetyltransferase]]
+[[Category: Large Structures]]
-[[Category: mcsg]]
+[[Category: Staphylococcus aureus subsp. aureus Mu50]]
-[[Category: midwest center for structural genomic]]
+[[Category: Clancy S]]
-[[Category: pfam08503]]
+[[Category: Cuff ME]]
-[[Category: protein structure initiative]]
+[[Category: Duggan E]]
-[[Category: psi-2]]
+[[Category: Joachimiak A]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:01:31 2008''