2omk: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2omk.gif|left|200px]]<br /><applet load="2omk" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2omk, resolution 1.80&Aring;" />
-'''Structure of the Bacteroides Thetaiotaomicron Thiamin Pyrophosphokinase'''<br />
-==About this Structure==
+==Structure of the Bacteroides Thetaiotaomicron Thiamin Pyrophosphokinase==
-OMK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Active as [http://en.wikipedia.org/wiki/Thiamine_diphosphokinase Thiamine diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.2 2.7.6.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OMK OCA].
+<StructureSection load='2omk' size='340' side='right'caption='[[2omk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-[[Category: Bacteroides thetaiotaomicron]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2omk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OMK FirstGlance]. <br>
-[[Category: Thiamine diphosphokinase]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-[[Category: Abdullah, J.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene></td></tr>
-[[Category: Anderson, W.F.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2omk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2omk OCA], [https://pdbe.org/2omk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2omk RCSB], [https://www.ebi.ac.uk/pdbsum/2omk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2omk ProSAT], [https://www.topsan.org/Proteins/MCSG/2omk TOPSAN]</span></td></tr>
-[[Category: Collart, F.R.]]
+</table>
-[[Category: Joachimiak, A.]]
+== Function ==
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+[https://www.uniprot.org/uniprot/Q8A545_BACTN Q8A545_BACTN]
-[[Category: Minasov, G.]]
+== Evolutionary Conservation ==
-[[Category: Shuvalova, L.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Vorontsov, I.I.]]
+Check<jmol>
-[[Category: crystal structure]]
+  <jmolCheckbox>
-[[Category: mcsg]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/om/2omk_consurf.spt"</scriptWhenChecked>
-[[Category: midwest center for structural genomics]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: protein structure initiative]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: psi-2]]
+  </jmolCheckbox>
-[[Category: structural genomics]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2omk ConSurf].
-[[Category: succinimide]]
+<div style="clear:both"></div>
-[[Category: thiamin pyrophosphokinase]]
+__TOC__
+</StructureSection>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:13:21 2008''
+[[Category: Bacteroides thetaiotaomicron VPI-5482]]
+[[Category: Large Structures]]
+[[Category: Abdullah J]]
+[[Category: Anderson WF]]
+[[Category: Collart FR]]
+[[Category: Joachimiak A]]
+[[Category: Minasov G]]
+[[Category: Shuvalova L]]
+[[Category: Vorontsov II]]