2i3d: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2i3d.png|left|200px]]
-{{STRUCTURE_2i3d|  PDB=2i3d  |  SCENE=  }}
+==Crystal Structure of Protein of Unknown Function ATU1826, a Putative Alpha/Beta Hydrolase from Agrobacterium tumefaciens==
+<StructureSection load='2i3d' size='340' side='right'caption='[[2i3d]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-===Crystal Structure of Protein of Unknown Function ATU1826, a Putative Alpha/Beta Hydrolase from Agrobacterium tumefaciens===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2i3d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I3D FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[2i3d]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I3D OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i3d OCA], [https://pdbe.org/2i3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i3d RCSB], [https://www.ebi.ac.uk/pdbsum/2i3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i3d ProSAT], [https://www.topsan.org/Proteins/MCSG/2i3d TOPSAN]</span></td></tr>
-[[Category: Agrobacterium tumefaciens str. c58]]
+</table>
-[[Category: Edwards, A.]]
+== Function ==
-[[Category: Joachimiak, A.]]
+[https://www.uniprot.org/uniprot/A9CIK7_AGRFC A9CIK7_AGRFC]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+== Evolutionary Conservation ==
-[[Category: Osipiuk, J.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Savchenko, A.]]
+Check<jmol>
-[[Category: Xu, X.]]
+  <jmolCheckbox>
-[[Category: Zheng, H.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i3/2i3d_consurf.spt"</scriptWhenChecked>
-[[Category: Apc5865]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Hydrolase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Mcsg]]
+  </jmolCheckbox>
-[[Category: Midwest center for structural genomic]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i3d ConSurf].
-[[Category: Protein structure initiative]]
+<div style="clear:both"></div>
-[[Category: Psi-2]]
+__TOC__
-[[Category: Structural genomic]]
+</StructureSection>
-[[Category: Unknown function]]
+[[Category: Agrobacterium fabrum str. C58]]
+[[Category: Large Structures]]
+[[Category: Edwards A]]
+[[Category: Joachimiak A]]
+[[Category: Osipiuk J]]
+[[Category: Savchenko A]]
+[[Category: Xu X]]
+[[Category: Zheng H]]