2gs8: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2gs8.gif|left|200px]]
- {{Structure
+==Structure of mevalonate pyrophosphate decarboxylase from Streptococcus pyogenes==
-|PDB= 2gs8 |SIZE=350|CAPTION= <scene name='initialview01'>2gs8</scene>, resolution 1.50&Aring;
+<StructureSection load='2gs8' size='340' side='right'caption='[[2gs8]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+<table><tr><td colspan='2'>[[2gs8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_M1_GAS Streptococcus pyogenes M1 GAS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GS8 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-|GENE= mvaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=160490 Streptococcus pyogenes M1 GAS])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3407 MVD1], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08544 GHMP_kinases_C]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gs8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gs8 OCA], [https://pdbe.org/2gs8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gs8 RCSB], [https://www.ebi.ac.uk/pdbsum/2gs8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gs8 ProSAT], [https://www.topsan.org/Proteins/MCSG/2gs8 TOPSAN]</span></td></tr>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gs8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gs8 OCA], [http://www.ebi.ac.uk/pdbsum/2gs8 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2gs8 RCSB]</span>
+</table>
-}}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-'''Structure of mevalonate pyrophosphate decarboxylase from Streptococcus pyogenes'''
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gs/2gs8_consurf.spt"</scriptWhenChecked>
-==About this Structure==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-GS8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes_m1_gas Streptococcus pyogenes m1 gas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GS8 OCA].
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Single protein]]
+  </jmolCheckbox>
-[[Category: Streptococcus pyogenes m1 gas]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gs8 ConSurf].
-[[Category: Clancy, S.]]
+<div style="clear:both"></div>
-[[Category: Cuff, M E.]]
+__TOC__
-[[Category: Joachimiak, A.]]
+</StructureSection>
-[[Category: Li, H.]]
+[[Category: Large Structures]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Streptococcus pyogenes M1 GAS]]
-[[Category: mcsg]]
+[[Category: Clancy S]]
-[[Category: mevalonate pyrophosphate decarboxylase]]
+[[Category: Cuff ME]]
-[[Category: midwest center for structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: protein structure initiative]]
+[[Category: Li H]]
-[[Category: psi]]
-[[Category: streptococcus pyogene]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:27:25 2008''