2gk4: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2gk4.gif|left|200px]]
- {{Structure
+==The Crystal Structure of the DNA/Pantothenate Metabolism Flavoprotein from Streptococcus pneumoniae==
-|PDB= 2gk4 |SIZE=350|CAPTION= <scene name='initialview01'>2gk4</scene>, resolution 1.83&Aring;
+<StructureSection load='2gk4' size='340' side='right'caption='[[2gk4]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+<table><tr><td colspan='2'>[[2gk4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GK4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GK4 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gk4 OCA], [https://pdbe.org/2gk4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gk4 RCSB], [https://www.ebi.ac.uk/pdbsum/2gk4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gk4 ProSAT], [https://www.topsan.org/Proteins/MCSG/2gk4 TOPSAN]</span></td></tr>
+</table>
-'''The Crystal Structure of the DNA/Pantothenate Metabolism Flavoprotein from Streptococcus pneumoniae'''
+== Function ==
+[https://www.uniprot.org/uniprot/A0A0H2UQ78_STRPN A0A0H2UQ78_STRPN]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-GK4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GK4 OCA].
+Check<jmol>
-[[Category: Single protein]]
+  <jmolCheckbox>
-[[Category: Streptococcus pneumoniae tigr4]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/2gk4_consurf.spt"</scriptWhenChecked>
-[[Category: Abdullah, J.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Joachimiak, A.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Kim, Y.]]
+  </jmolCheckbox>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gk4 ConSurf].
-[[Category: Zhou, M.]]
+<div style="clear:both"></div>
-[[Category: GOL]]
+__TOC__
-[[Category: alpha-beta-alpha sandwich]]
+</StructureSection>
-[[Category: flavoprotein]]
+[[Category: Large Structures]]
-[[Category: mcsg]]
+[[Category: Streptococcus pneumoniae TIGR4]]
-[[Category: midwest center for structural genomic]]
+[[Category: Abdullah J]]
-[[Category: protein structure initiative]]
+[[Category: Joachimiak A]]
-[[Category: psi]]
+[[Category: Kim Y]]
-[[Category: structural genomic]]
+[[Category: Zhou M]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:05:39 2008''