2gf4: Difference between revisions

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-[[Image:2gf4.gif|left|200px]]<br /><applet load="2gf4" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2gf4, resolution 2.07&Aring;" />
-'''Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14'''<br />
-==About this Structure==
+==Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14==
-GF4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Halobacterium_sp. Halobacterium sp.] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=ACT:'>ACT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GF4 OCA].
+<StructureSection load='2gf4' size='340' side='right'caption='[[2gf4]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
-[[Category: Halobacterium sp.]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2gf4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum_NRC-1 Halobacterium salinarum NRC-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GF4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GF4 FirstGlance]. <br>
-[[Category: Acton, T B.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07&#8491;</td></tr>
-[[Category: Benach, J.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Cunningham, K.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gf4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gf4 OCA], [https://pdbe.org/2gf4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gf4 RCSB], [https://www.ebi.ac.uk/pdbsum/2gf4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gf4 ProSAT], [https://www.topsan.org/Proteins/NESGC/2gf4 TOPSAN]</span></td></tr>
-[[Category: Forouhar, F F.]]
+</table>
-[[Category: Hunt, J F.]]
+== Evolutionary Conservation ==
-[[Category: Janjua, H.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Jayaraman, S.]]
+Check<jmol>
-[[Category: Ma, L C.]]
+  <jmolCheckbox>
-[[Category: Montelione, G T.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gf4_consurf.spt"</scriptWhenChecked>
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Tong, L.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Wang, D.]]
+  </jmolCheckbox>
-[[Category: Xiao, R.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gf4 ConSurf].
-[[Category: Zhou, W.]]
+<div style="clear:both"></div>
-[[Category: ACT]]
+__TOC__
-[[Category: CA]]
+</StructureSection>
-[[Category: hsr14]]
+[[Category: Halobacterium salinarum NRC-1]]
-[[Category: nesg]]
+[[Category: Large Structures]]
-[[Category: northeast structural genomics consortium]]
+[[Category: Acton TB]]
-[[Category: protein structure initiative]]
+[[Category: Benach J]]
-[[Category: psi]]
+[[Category: Cunningham K]]
-[[Category: structural genomics]]
+[[Category: Forouhar FF]]
+[[Category: Hunt JF]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:31:12 2008''
+[[Category: Janjua H]]
+[[Category: Jayaraman S]]
+[[Category: Ma L-C]]
+[[Category: Montelione GT]]
+[[Category: Tong L]]
+[[Category: Wang D]]
+[[Category: Xiao R]]
+[[Category: Zhou W]]