2fex: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2fex.gif|left|200px]]


{{Structure
==The Crystal Structure of DJ-1 Superfamily Protein Atu0886 from Agrobacterium tumefaciens==
|PDB= 2fex |SIZE=350|CAPTION= <scene name='initialview01'>2fex</scene>, resolution 1.70&Aring;
<StructureSection load='2fex' size='340' side='right'caption='[[2fex]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2fex]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FEX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FEX FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
|GENE= Atu0886 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03140 GATase1_PfpI_3]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fex OCA], [https://pdbe.org/2fex PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fex RCSB], [https://www.ebi.ac.uk/pdbsum/2fex PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fex ProSAT], [https://www.topsan.org/Proteins/MCSG/2fex TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fex OCA], [http://www.ebi.ac.uk/pdbsum/2fex PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2fex RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/A9CJS5_AGRFC A9CJS5_AGRFC]
 
== Evolutionary Conservation ==
'''The Crystal Structure of DJ-1 Superfamily Protein Atu0886 from Agrobacterium tumefaciens'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fe/2fex_consurf.spt"</scriptWhenChecked>
2FEX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FEX OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Agrobacterium tumefaciens str. c58]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Chruszcz, M.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fex ConSurf].
[[Category: Cymborowski, M T.]]
<div style="clear:both"></div>
[[Category: Edwards, A M.]]
__TOC__
[[Category: Gu, J.]]
</StructureSection>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Agrobacterium fabrum str. C58]]
[[Category: Minor, W.]]
[[Category: Large Structures]]
[[Category: Savchenko, A.]]
[[Category: Chruszcz M]]
[[Category: Shumilin, I.]]
[[Category: Cymborowski MT]]
[[Category: Wang, S.]]
[[Category: Edwards AM]]
[[Category: Xu, X.]]
[[Category: Gu J]]
[[Category: mcsg]]
[[Category: Joachimiak A]]
[[Category: midwest center for structural genomic]]
[[Category: Minor W]]
[[Category: protein structure initiative]]
[[Category: Savchenko A]]
[[Category: psi]]
[[Category: Shumilin I]]
[[Category: structural genomic]]
[[Category: Wang S]]
 
[[Category: Xu X]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:01:55 2008''

Latest revision as of 03:55, 21 November 2024

The Crystal Structure of DJ-1 Superfamily Protein Atu0886 from Agrobacterium tumefaciensThe Crystal Structure of DJ-1 Superfamily Protein Atu0886 from Agrobacterium tumefaciens

Structural highlights

2fex is a 3 chain structure with sequence from Agrobacterium fabrum str. C58. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.7Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A9CJS5_AGRFC

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2fex, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2fex&oldid=4204300"