2pd1: Difference between revisions

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[[Image:2pd1.jpg|left|200px]]


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==Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea==
The line below this paragraph, containing "STRUCTURE_2pd1", creates the "Structure Box" on the page.
<StructureSection load='2pd1' size='340' side='right'caption='[[2pd1]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2pd1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PD1 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2pd1|  PDB=2pd1  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pd1 OCA], [https://pdbe.org/2pd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pd1 RCSB], [https://www.ebi.ac.uk/pdbsum/2pd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pd1 ProSAT], [https://www.topsan.org/Proteins/MCSG/2pd1 TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea'''
== Function ==
 
[https://www.uniprot.org/uniprot/Q82S47_NITEU Q82S47_NITEU]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2PD1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pd1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pd1 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Nitrosomonas europaea]]
[[Category: Nitrosomonas europaea]]
[[Category: Single protein]]
[[Category: Edwards A]]
[[Category: Edwards, A.]]
[[Category: Evdokimova E]]
[[Category: Evdokimova, E.]]
[[Category: Joachimiak A]]
[[Category: Joachimiak, A.]]
[[Category: Kagan O]]
[[Category: Kagan, O.]]
[[Category: Osipiuk J]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Savchenko A]]
[[Category: Osipiuk, J.]]
[[Category: Savchenko, A.]]
[[Category: Apc7253]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Ne2512 protein]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 12:53:01 2008''

Latest revision as of 12:25, 6 November 2024

Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaeaCrystal structure of NE2512 protein of unknown function from Nitrosomonas europaea

Structural highlights

2pd1 is a 4 chain structure with sequence from Nitrosomonas europaea. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.86Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q82S47_NITEU

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2pd1, resolution 1.86Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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