2pd1: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2pd1.png|left|200px]]
-{{STRUCTURE_2pd1|  PDB=2pd1  |  SCENE=  }}
+==Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea==
+<StructureSection load='2pd1' size='340' side='right'caption='[[2pd1]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-===Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2pd1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PD1 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[2pd1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pd1 OCA], [https://pdbe.org/2pd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pd1 RCSB], [https://www.ebi.ac.uk/pdbsum/2pd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pd1 ProSAT], [https://www.topsan.org/Proteins/MCSG/2pd1 TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q82S47_NITEU Q82S47_NITEU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pd1_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pd1 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Nitrosomonas europaea]]
-[[Category: Edwards, A.]]
+[[Category: Edwards A]]
-[[Category: Evdokimova, E.]]
+[[Category: Evdokimova E]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: Kagan, O.]]
+[[Category: Kagan O]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Osipiuk J]]
-[[Category: Osipiuk, J.]]
+[[Category: Savchenko A]]
-[[Category: Savchenko, A.]]
-[[Category: Apc7253]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Ne2512 protein]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]