2ppg: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2ppg.gif|left|200px]]


{{Structure
==Crystal structure of putative isomerase from Sinorhizobium meliloti==
|PDB= 2ppg |SIZE=350|CAPTION= <scene name='initialview01'>2ppg</scene>, resolution 2.490&Aring;
<StructureSection load='2ppg' size='340' side='right'caption='[[2ppg]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PPG FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.49&#8491;</td></tr>
|GENE= RA0374, SMa0708 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 Sinorhizobium meliloti])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4948 COG4948], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03316 MR_like]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ppg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppg OCA], [https://pdbe.org/2ppg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ppg RCSB], [https://www.ebi.ac.uk/pdbsum/2ppg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ppg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ppg TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ppg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppg OCA], [http://www.ebi.ac.uk/pdbsum/2ppg PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ppg RCSB]</span>
</table>
}}
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
'''Crystal structure of putative isomerase from Sinorhizobium meliloti'''
Check<jmol>
 
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2ppg_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
2PPG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPG OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Sinorhizobium meliloti]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ppg ConSurf].
[[Category: Almo, S C.]]
<div style="clear:both"></div>
[[Category: Burley, S K.]]
__TOC__
[[Category: Dickey, M.]]
</StructureSection>
[[Category: Groshong, C.]]
[[Category: Large Structures]]
[[Category: Logan, C.]]
[[Category: Almo SC]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Burley SK]]
[[Category: Ramagopal, U A.]]
[[Category: Dickey M]]
[[Category: Sauder, J M.]]
[[Category: Groshong C]]
[[Category: Toro, R.]]
[[Category: Logan C]]
[[Category: isomerase]]
[[Category: Ramagopal UA]]
[[Category: new york structural genomix research consortium]]
[[Category: Sauder JM]]
[[Category: nysgxrc]]
[[Category: Toro R]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:40:23 2008''

Latest revision as of 11:29, 30 October 2024

Crystal structure of putative isomerase from Sinorhizobium melilotiCrystal structure of putative isomerase from Sinorhizobium meliloti

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.49Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2ppg, resolution 2.49Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2ppg&oldid=4204042"