2dpp: Difference between revisions

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 ==Crystal structure of thermostable Bacillus sp. RAPc8 nitrile hydratase==
-<StructureSection load='2dpp' size='340' side='right' caption='[[2dpp]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
+<StructureSection load='2dpp' size='340' side='right'caption='[[2dpp]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2dpp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp._rapc8 Bacillus sp. rapc8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DPP FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2dpp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._RAPc8 Bacillus sp. RAPc8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DPP FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.52&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dpp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpp OCA], [https://pdbe.org/2dpp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dpp RCSB], [https://www.ebi.ac.uk/pdbsum/2dpp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dpp ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dpp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dpp RCSB], [http://www.ebi.ac.uk/pdbsum/2dpp PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q84FS5_9BACI Q84FS5_9BACI]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/2dpp_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dp/2dpp_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dpp ConSurf].
 <div style="clear:both"></div>
@@ Line 23: / Line 25: @@
 __TOC__
 </StructureSection>
-[[Category: Bacillus sp. rapc8]]
+[[Category: Bacillus sp. RAPc8]]
-[[Category: Nitrile hydratase]]
+[[Category: Large Structures]]
-[[Category: Cameron, R A.]]
+[[Category: Cameron RA]]
-[[Category: Cowan, D A.]]
+[[Category: Cowan DA]]
-[[Category: Sayed, M F.]]
+[[Category: Sayed MF]]
-[[Category: Sewell, B T.]]
+[[Category: Sewell BT]]
-[[Category: Tastan-Bishop, A O.]]
+[[Category: Tastan-Bishop AO]]
-[[Category: Tsekoa, T L.]]
+[[Category: Tsekoa TL]]
-[[Category: Cobalt]]
-[[Category: Lyase]]
-[[Category: Nitrile hydratase]]
-[[Category: Oxidised cy]]