2p9j: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2p9j.jpg|left|200px]]


{{Structure
==Crystal structure of AQ2171 from Aquifex aeolicus==
|PDB= 2p9j |SIZE=350|CAPTION= <scene name='initialview01'>2p9j</scene>, resolution 2.40&Aring;
<StructureSection load='2p9j' size='340' side='right'caption='[[2p9j]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
<table><tr><td colspan='2'>[[2p9j]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9J FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
|GENE= aq_2171 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1778 COG1778]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9j OCA], [https://pdbe.org/2p9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9j RCSB], [https://www.ebi.ac.uk/pdbsum/2p9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9j ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9j TOPSAN]</span></td></tr>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9j OCA], [http://www.ebi.ac.uk/pdbsum/2p9j PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2p9j RCSB]</span>
</table>
}}
== Function ==
 
[https://www.uniprot.org/uniprot/O67920_AQUAE O67920_AQUAE]
'''Crystal structure of AQ2171 from Aquifex aeolicus'''
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
==About this Structure==
  <jmolCheckbox>
2P9J is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9J OCA].  
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9j_consurf.spt"</scriptWhenChecked>
[[Category: Aquifex aeolicus]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Single protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Agari, Y.]]
  </jmolCheckbox>
[[Category: Chen, L.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9j ConSurf].
[[Category: Ebihara, A.]]
<div style="clear:both"></div>
[[Category: Kuramitsu, S.]]
__TOC__
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
</StructureSection>
[[Category: Rose, J P.]]
[[Category: Aquifex aeolicus VF5]]
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
[[Category: Large Structures]]
[[Category: Shinkai, A.]]
[[Category: Agari Y]]
[[Category: Wang, B-C.]]
[[Category: Chen L]]
[[Category: Yang, H.]]
[[Category: Ebihara A]]
[[Category: Yokoyama, S.]]
[[Category: Kuramitsu S]]
[[Category: aq2171]]
[[Category: Rose JP]]
[[Category: aquifex aeolicus]]
[[Category: Shinkai A]]
[[Category: protein structure initiative]]
[[Category: Wang B-C]]
[[Category: psi]]
[[Category: Yang H]]
[[Category: riken]]
[[Category: Yokoyama S]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: secsg]]
[[Category: southeast collaboratory for structural genomic]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:39:02 2008''

Latest revision as of 11:27, 30 October 2024

Crystal structure of AQ2171 from Aquifex aeolicusCrystal structure of AQ2171 from Aquifex aeolicus

Structural highlights

2p9j is a 8 chain structure with sequence from Aquifex aeolicus VF5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O67920_AQUAE

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2p9j, resolution 2.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2p9j&oldid=4204027"