2p9j: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2p9j.jpg|left|200px]]<br /><applet load="2p9j" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2p9j, resolution 2.40&Aring;" />
-'''Crystal structure of AQ2171 from Aquifex aeolicus'''<br />
-==About this Structure==
+==Crystal structure of AQ2171 from Aquifex aeolicus==
-P9J is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9J OCA].
+<StructureSection load='2p9j' size='340' side='right'caption='[[2p9j]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-[[Category: Aquifex aeolicus]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2p9j]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9J FirstGlance]. <br>
-[[Category: Agari, Y.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-[[Category: Chen, L.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Ebihara, A.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9j OCA], [https://pdbe.org/2p9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9j RCSB], [https://www.ebi.ac.uk/pdbsum/2p9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9j ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9j TOPSAN]</span></td></tr>
-[[Category: Kuramitsu, S.]]
+</table>
-[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+== Function ==
-[[Category: Rose, J.P.]]
+[https://www.uniprot.org/uniprot/O67920_AQUAE O67920_AQUAE]
-[[Category: SECSG, Southeast.Collaboratory.for.Structural.Genomics.]]
+== Evolutionary Conservation ==
-[[Category: Shinkai, A.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Wang, B-C.]]
+Check<jmol>
-[[Category: Yang, H.]]
+  <jmolCheckbox>
-[[Category: Yokoyama, S.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9j_consurf.spt"</scriptWhenChecked>
-[[Category: aq2171]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: aquifex aeolicus]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: protein structure initiative]]
+  </jmolCheckbox>
-[[Category: psi]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9j ConSurf].
-[[Category: riken]]
+<div style="clear:both"></div>
-[[Category: riken structural genomics/proteomics initiative]]
+__TOC__
-[[Category: rsgi]]
+</StructureSection>
-[[Category: secsg]]
+[[Category: Aquifex aeolicus VF5]]
-[[Category: southeast collaboratory for structural genomics]]
+[[Category: Large Structures]]
-[[Category: structural genomics]]
+[[Category: Agari Y]]
+[[Category: Chen L]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:07:24 2008''
+[[Category: Ebihara A]]
+[[Category: Kuramitsu S]]
+[[Category: Rose JP]]
+[[Category: Shinkai A]]
+[[Category: Wang B-C]]
+[[Category: Yang H]]
+[[Category: Yokoyama S]]