2ql3: Difference between revisions

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-[[Image:2ql3.gif|left|200px]]
- {{Structure
+==Crystal structure of the C-terminal domain of a probable LysR family transcriptional regulator from Rhodococcus sp. RHA1==
-|PDB= 2ql3 |SIZE=350|CAPTION= <scene name='initialview01'>2ql3</scene>, resolution 2.05&Aring;
+<StructureSection load='2ql3' size='340' side='right'caption='[[2ql3]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
+<table><tr><td colspan='2'>[[2ql3]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QL3 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-|GENE= RHA1_ro01847 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=101510 Rhodococcus sp. RHA1])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03466 LysR_substrate]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ql3 OCA], [https://pdbe.org/2ql3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ql3 RCSB], [https://www.ebi.ac.uk/pdbsum/2ql3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ql3 ProSAT], [https://www.topsan.org/Proteins/MCSG/2ql3 TOPSAN]</span></td></tr>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ql3 OCA], [http://www.ebi.ac.uk/pdbsum/2ql3 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2ql3 RCSB]</span>
+</table>
-}}
+== Function ==
+[https://www.uniprot.org/uniprot/Q0SFM8_RHOJR Q0SFM8_RHOJR]
-'''Crystal structure of the C-terminal domain of a probable LysR family transcriptional regulator from Rhodococcus sp. RHA1'''
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-QL3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp._rha1 Rhodococcus sp. rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QL3 OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/2ql3_consurf.spt"</scriptWhenChecked>
-[[Category: Rhodococcus sp. rha1]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Single protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Edwards, A.]]
+  </jmolCheckbox>
-[[Category: Joachimiak, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ql3 ConSurf].
-[[Category: Kagen, O.]]
+<div style="clear:both"></div>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+__TOC__
-[[Category: Savchenko, A.]]
+</StructureSection>
-[[Category: Skarina, T.]]
+[[Category: Large Structures]]
-[[Category: Tan, K.]]
+[[Category: Rhodococcus jostii RHA1]]
-[[Category: apc7314]]
+[[Category: Edwards A]]
-[[Category: lysr family]]
+[[Category: Joachimiak A]]
-[[Category: mcsg]]
+[[Category: Kagen O]]
-[[Category: midwest center for structural genomic]]
+[[Category: Savchenko A]]
-[[Category: protein structure initiative]]
+[[Category: Skarina T]]
-[[Category: psi-2]]
+[[Category: Tan K]]
-[[Category: rhodococcus sp. rha1]]
-[[Category: structural genomic]]
-[[Category: transcriptional regulator]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:43:12 2008''