2ql3: Difference between revisions

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 ==Crystal structure of the C-terminal domain of a probable LysR family transcriptional regulator from Rhodococcus sp. RHA1==
-<StructureSection load='2ql3' size='340' side='right' caption='[[2ql3]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+<StructureSection load='2ql3' size='340' side='right'caption='[[2ql3]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2ql3]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhosr Rhosr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QL3 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2ql3]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QL3 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHA1_ro01847 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=101510 RHOSR])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ql3 OCA], [https://pdbe.org/2ql3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ql3 RCSB], [https://www.ebi.ac.uk/pdbsum/2ql3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ql3 ProSAT], [https://www.topsan.org/Proteins/MCSG/2ql3 TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ql3 OCA], [http://pdbe.org/2ql3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/2ql3 PDBsum], [http://www.topsan.org/Proteins/MCSG/2ql3 TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q0SFM8_RHOJR Q0SFM8_RHOJR]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/2ql3_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/2ql3_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ql3 ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Rhosr]]
+[[Category: Large Structures]]
-[[Category: Edwards, A]]
+[[Category: Rhodococcus jostii RHA1]]
-[[Category: Joachimiak, A]]
+[[Category: Edwards A]]
-[[Category: Kagen, O]]
+[[Category: Joachimiak A]]
-[[Category: Structural genomic]]
+[[Category: Kagen O]]
-[[Category: Savchenko, A]]
+[[Category: Savchenko A]]
-[[Category: Skarina, T]]
+[[Category: Skarina T]]
-[[Category: Tan, K]]
+[[Category: Tan K]]
-[[Category: Apc7314]]
-[[Category: Lysr family]]
-[[Category: Mcsg]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Rhodococcus sp. rha1]]
-[[Category: Transcription]]
-[[Category: Transcriptional regulator]]