2qm2: Difference between revisions

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-{{Seed}}
-[[Image:2qm2.png|left|200px]]
-<!--
+==Putative HopJ type III effector protein from Vibrio parahaemolyticus==
-The line below this paragraph, containing "STRUCTURE_2qm2", creates the "Structure Box" on the page.
+<StructureSection load='2qm2' size='340' side='right'caption='[[2qm2]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2qm2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QM2 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-{{STRUCTURE_2qm2|  PDB=2qm2  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qm2 OCA], [https://pdbe.org/2qm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qm2 RCSB], [https://www.ebi.ac.uk/pdbsum/2qm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qm2 ProSAT], [https://www.topsan.org/Proteins/MCSG/2qm2 TOPSAN]</span></td></tr>
+</table>
-===Putative HopJ type III effector protein from Vibrio parahaemolyticus===
+== Function ==
+[https://www.uniprot.org/uniprot/Q87IM6_VIBPA Q87IM6_VIBPA]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-QM2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM2 OCA].
+Check<jmol>
-[[Category: Single protein]]
+  <jmolCheckbox>
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qm2_consurf.spt"</scriptWhenChecked>
-[[Category: Abdullah, J.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Chang, C.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Joachimiak, A.]]
+  </jmolCheckbox>
-[[Category: Kim, Y.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qm2 ConSurf].
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+<div style="clear:both"></div>
-[[Category: Volkart, L.]]
+__TOC__
-[[Category: Alpha-beta structure]]
+</StructureSection>
-[[Category: Mcsg]]
+[[Category: Large Structures]]
-[[Category: Midwest center for structural genomic]]
+[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-[[Category: Protein structure initiative]]
+[[Category: Abdullah J]]
-[[Category: Psi-2]]
+[[Category: Chang C]]
-[[Category: Structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: Unknown function]]
+[[Category: Kim Y]]
+[[Category: Volkart L]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 21:43:04 2008''