2ibd: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2ibd.gif|left|200px]]<br /><applet load="2ibd" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2ibd, resolution 1.50&Aring;" />
-'''Crystal structure of Probable transcriptional regulatory protein RHA5900'''<br />
-==About this Structure==
+==Crystal structure of Probable transcriptional regulatory protein RHA5900==
-IBD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IBD OCA].
+<StructureSection load='2ibd' size='340' side='right'caption='[[2ibd]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-[[Category: Rhodococcus sp.]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2ibd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IBD FirstGlance]. <br>
-[[Category: Chang, C.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-[[Category: Edwards, A.M.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Evdokimova, E.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ibd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ibd OCA], [https://pdbe.org/2ibd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ibd RCSB], [https://www.ebi.ac.uk/pdbsum/2ibd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ibd ProSAT], [https://www.topsan.org/Proteins/MCSG/2ibd TOPSAN]</span></td></tr>
-[[Category: Joachimiak, A.]]
+</table>
-[[Category: Kagan, O.]]
+== Evolutionary Conservation ==
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Savchenko, A.]]
+Check<jmol>
-[[Category: MG]]
+  <jmolCheckbox>
-[[Category: mcsg]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/2ibd_consurf.spt"</scriptWhenChecked>
-[[Category: midwest center for structural genomics]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: probable transcriptional regulatory protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: protein structure initiative]]
+  </jmolCheckbox>
-[[Category: psi-2]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ibd ConSurf].
-[[Category: rhodococcus sp. rha1]]
+<div style="clear:both"></div>
-[[Category: structural genomics]]
+__TOC__
+</StructureSection>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:06:30 2008''
+[[Category: Large Structures]]
+[[Category: Rhodococcus jostii RHA1]]
+[[Category: Chang C]]
+[[Category: Edwards AM]]
+[[Category: Evdokimova E]]
+[[Category: Joachimiak A]]
+[[Category: Kagan O]]
+[[Category: Savchenko A]]