2hrg: Difference between revisions

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 ==Crystal Structure of Blue Laccase from Trametes trogii complexed with p-methylbenzoate==
-<StructureSection load='2hrg' size='340' side='right' caption='[[2hrg]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
+<StructureSection load='2hrg' size='340' side='right'caption='[[2hrg]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2hrg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Coriolopsis_trogii Coriolopsis trogii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HRG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HRG FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2hrg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Coriolopsis_trogii Coriolopsis trogii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HRG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HRG FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4MA:4-METHYLBENZOIC+ACID'>4MA</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CBS:DI(N-ACETYL-D-GLUCOSAMINE)'>CBS</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2hrh|2hrh]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4MA:4-METHYLBENZOIC+ACID'>4MA</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Laccase Laccase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.2 1.10.3.2] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hrg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hrg OCA], [https://pdbe.org/2hrg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hrg RCSB], [https://www.ebi.ac.uk/pdbsum/2hrg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hrg ProSAT]</span></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hrg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hrg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hrg RCSB], [http://www.ebi.ac.uk/pdbsum/2hrg PDBsum]</span></td></tr>
+</table>
-<table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9HDQ0_9APHY Q9HDQ0_9APHY]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hr/2hrg_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hr/2hrg_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hrg ConSurf].
 <div style="clear:both"></div>
+==See Also==
+*[[Laccase 3D structures|Laccase 3D structures]]
 __TOC__
 </StructureSection>
 [[Category: Coriolopsis trogii]]
-[[Category: Laccase]]
+[[Category: Large Structures]]
-[[Category: Briganti, F.]]
+[[Category: Briganti F]]
-[[Category: Ferraroni, M.]]
+[[Category: Ferraroni M]]
-[[Category: Gullotto, A.]]
+[[Category: Gullotto A]]
-[[Category: Matera, I.]]
+[[Category: Matera I]]
-[[Category: Scozzafava, A.]]
+[[Category: Scozzafava A]]
-[[Category: Tilli, S.]]
+[[Category: Tilli S]]
-[[Category: Laccase]]
-[[Category: Lignin degradation]]
-[[Category: Oxidoreductase]]