2r6v: Difference between revisions

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[[Image:2r6v.gif|left|200px]]


{{Structure
==Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution==
|PDB= 2r6v |SIZE=350|CAPTION= <scene name='initialview01'>2r6v</scene>, resolution 1.250&Aring;
<StructureSection load='2r6v' size='340' side='right'caption='[[2r6v]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene> and <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
<table><tr><td colspan='2'>[[2r6v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R6V FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
|GENE= NP_142786.1, PH0856 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii OT3])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6v OCA], [https://pdbe.org/2r6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r6v RCSB], [https://www.ebi.ac.uk/pdbsum/2r6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r6v ProSAT], [https://www.topsan.org/Proteins/JCSG/2r6v TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution'''
== Function ==
 
[https://www.uniprot.org/uniprot/Y856_PYRHO Y856_PYRHO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2R6V is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6V OCA].
Check<jmol>
[[Category: Pyrococcus horikoshii ot3]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r6/2r6v_consurf.spt"</scriptWhenChecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: EDO]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: FMN]]
  </jmolCheckbox>
[[Category: NCA]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r6v ConSurf].
[[Category: flavin reductase like domain]]
<div style="clear:both"></div>
[[Category: flavoprotein]]
__TOC__
[[Category: fmn-binding protein]]
</StructureSection>
[[Category: jcsg]]
[[Category: Large Structures]]
[[Category: joint center for structural genomic]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: np_142786 1]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:33:09 2008''

Latest revision as of 11:37, 30 October 2024

Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolutionCrystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution

Structural highlights

2r6v is a 1 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.25Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Y856_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2r6v, resolution 1.25Å

Drag the structure with the mouse to rotate

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OCA
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