2r6v: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2r6v.gif|left|200px]]<br /><applet load="2r6v" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2r6v, resolution 1.250&Aring;" />
-'''Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution'''<br />
-==About this Structure==
+==Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii at 1.35 A resolution==
-R6V is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3] with <scene name='pdbligand=FMN:'>FMN</scene>, <scene name='pdbligand=NCA:'>NCA</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6V OCA].
+<StructureSection load='2r6v' size='340' side='right'caption='[[2r6v]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
-[[Category: Pyrococcus horikoshii ot3]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2r6v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R6V FirstGlance]. <br>
-[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
-[[Category: EDO]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene></td></tr>
-[[Category: FMN]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r6v OCA], [https://pdbe.org/2r6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r6v RCSB], [https://www.ebi.ac.uk/pdbsum/2r6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r6v ProSAT], [https://www.topsan.org/Proteins/JCSG/2r6v TOPSAN]</span></td></tr>
-[[Category: NCA]]
+</table>
-[[Category: flavin reductase like domain]]
+== Function ==
-[[Category: flavoprotein]]
+[https://www.uniprot.org/uniprot/Y856_PYRHO Y856_PYRHO]
-[[Category: fmn-binding protein]]
+== Evolutionary Conservation ==
-[[Category: jcsg]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: joint center for structural genomics]]
+Check<jmol>
-[[Category: np_142786.1]]
+  <jmolCheckbox>
-[[Category: protein structure initiative]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r6/2r6v_consurf.spt"</scriptWhenChecked>
-[[Category: psi-2]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: structural genomics]]
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:30:28 2008''
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r6v ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Pyrococcus horikoshii OT3]]