2rdy: Difference between revisions

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==Crystal structure of a putative glycoside hydrolase family protein from Bacillus halodurans==
==Crystal structure of a putative glycoside hydrolase family protein from Bacillus halodurans==
<StructureSection load='2rdy' size='340' side='right' caption='[[2rdy]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
<StructureSection load='2rdy' size='340' side='right'caption='[[2rdy]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2rdy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bachd Bachd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RDY FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDY FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BH0842 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272558 BACHD])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdy OCA], [http://pdbe.org/2rdy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rdy RCSB], [http://www.ebi.ac.uk/pdbsum/2rdy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdy ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2rdy TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdy OCA], [https://pdbe.org/2rdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdy RCSB], [https://www.ebi.ac.uk/pdbsum/2rdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rdy TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdy_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdy_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bachd]]
[[Category: Large Structures]]
[[Category: Burley, S K]]
[[Category: Burley SK]]
[[Category: Structural genomic]]
[[Category: Sugadev R]]
[[Category: Sugadev, R]]
[[Category: Swaminathan S]]
[[Category: Swaminathan, S]]
[[Category: Hydrolase]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: PSI, Protein structure initiative]]

Latest revision as of 12:29, 6 November 2024

Crystal structure of a putative glycoside hydrolase family protein from Bacillus haloduransCrystal structure of a putative glycoside hydrolase family protein from Bacillus halodurans

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.03Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2rdy, resolution 2.03Å

Drag the structure with the mouse to rotate

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OCA